Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.06□□□□□ -0.16
CXCL1P09341 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CXCL1P09341 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.05□□□□□ -0.16
CXCL1P09341 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.05□□□□□ -0.16
CXCL1P09341 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.05□□□□□ -0.16
CXCL1P09341 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.05□□□□□ -0.16
CXCL1P09341 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.05□□□□□ -0.16
CXCL1P09341 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 AC006015.1-201ENST00000429970 570 ntBASIC14.05□□□□□ -0.16
CXCL1P09341 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
CXCL1P09341 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.05□□□□□ -0.16
CXCL1P09341 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC14.05□□□□□ -0.16
CXCL1P09341 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.05□□□□□ -0.16
CXCL1P09341 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CXCL1P09341 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CXCL1P09341 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CXCL1P09341 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CXCL1P09341 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.04□□□□□ -0.16
CXCL1P09341 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CXCL1P09341 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CXCL1P09341 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.04□□□□□ -0.16
CXCL1P09341 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 METTL26-203ENST00000397664 604 ntTSL 2 BASIC14.04□□□□□ -0.16
CXCL1P09341 ZNRF2P3-201ENST00000424200 374 ntBASIC14.04□□□□□ -0.16
CXCL1P09341 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC14.04□□□□□ -0.16
CXCL1P09341 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC14.04□□□□□ -0.16
CXCL1P09341 AL121906.2-201ENST00000621597 723 ntBASIC14.04□□□□□ -0.16
CXCL1P09341 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 CRK-204ENST00000574295 1391 ntTSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CXCL1P09341 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC14.04□□□□□ -0.16
CXCL1P09341 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 HEIH-201ENST00000623091 1652 ntBASIC14.04□□□□□ -0.16
CXCL1P09341 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CXCL1P09341 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
CXCL1P09341 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CXCL1P09341 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CXCL1P09341 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CXCL1P09341 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms