Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.36■■□□□ 1.33
PTCHD1Q96NR3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTCHD1Q96NR3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTCHD1Q96NR3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTCHD1Q96NR3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
PTCHD1Q96NR3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.36■■□□□ 1.33
PTCHD1Q96NR3 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PTCHD1Q96NR3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.35■■□□□ 1.33
PTCHD1Q96NR3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PTCHD1Q96NR3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTCHD1Q96NR3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTCHD1Q96NR3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTCHD1Q96NR3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
PTCHD1Q96NR3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.34■■□□□ 1.33
PTCHD1Q96NR3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTCHD1Q96NR3 RNF126P1-201ENST00000567452 1320 ntBASIC23.33■■□□□ 1.32
PTCHD1Q96NR3 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.32■■□□□ 1.32
PTCHD1Q96NR3 WHAMMP3-201ENST00000611636 1609 ntBASIC23.31■■□□□ 1.32
PTCHD1Q96NR3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PTCHD1Q96NR3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.31■■□□□ 1.32
PTCHD1Q96NR3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTCHD1Q96NR3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTCHD1Q96NR3 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
PTCHD1Q96NR3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PTCHD1Q96NR3 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.29■■□□□ 1.32
PTCHD1Q96NR3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
PTCHD1Q96NR3 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
PTCHD1Q96NR3 AC092296.2-201ENST00000589470 999 ntBASIC23.28■■□□□ 1.32
PTCHD1Q96NR3 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PTCHD1Q96NR3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PTCHD1Q96NR3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PTCHD1Q96NR3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PTCHD1Q96NR3 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PTCHD1Q96NR3 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
PTCHD1Q96NR3 RARRES2P2-201ENST00000394842 485 ntBASIC23.27■■□□□ 1.32
PTCHD1Q96NR3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
PTCHD1Q96NR3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.31
PTCHD1Q96NR3 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCHD1Q96NR3 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.26■■□□□ 1.31
PTCHD1Q96NR3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.26■■□□□ 1.31
PTCHD1Q96NR3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCHD1Q96NR3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PTCHD1Q96NR3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.24■■□□□ 1.31
PTCHD1Q96NR3 ECEL1P2-201ENST00000461596 1295 ntBASIC23.24■■□□□ 1.31
PTCHD1Q96NR3 AL157400.5-201ENST00000507624 621 ntBASIC23.24■■□□□ 1.31
PTCHD1Q96NR3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PTCHD1Q96NR3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.23■■□□□ 1.31
PTCHD1Q96NR3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCHD1Q96NR3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PTCHD1Q96NR3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PTCHD1Q96NR3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PTCHD1Q96NR3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PTCHD1Q96NR3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
PTCHD1Q96NR3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD1Q96NR3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD1Q96NR3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.21■■□□□ 1.31
PTCHD1Q96NR3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.21■■□□□ 1.31
PTCHD1Q96NR3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD1Q96NR3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD1Q96NR3 AL449106.1-201ENST00000608517 1980 ntBASIC23.2■■□□□ 1.3
PTCHD1Q96NR3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD1Q96NR3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD1Q96NR3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD1Q96NR3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD1Q96NR3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.19■■□□□ 1.3
PTCHD1Q96NR3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCHD1Q96NR3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.19■■□□□ 1.3
PTCHD1Q96NR3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.19■■□□□ 1.3
PTCHD1Q96NR3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
PTCHD1Q96NR3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD1Q96NR3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.18■■□□□ 1.3
PTCHD1Q96NR3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
PTCHD1Q96NR3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD1Q96NR3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD1Q96NR3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PTCHD1Q96NR3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD1Q96NR3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCHD1Q96NR3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.17■■□□□ 1.3
PTCHD1Q96NR3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.17■■□□□ 1.3
PTCHD1Q96NR3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.17■■□□□ 1.3
PTCHD1Q96NR3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.17■■□□□ 1.3
PTCHD1Q96NR3 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
PTCHD1Q96NR3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
PTCHD1Q96NR3 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 SMPD5-203ENST00000639008 1464 ntBASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCHD1Q96NR3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTCHD1Q96NR3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.15■■□□□ 1.3
PTCHD1Q96NR3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTCHD1Q96NR3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.15■■□□□ 1.3
PTCHD1Q96NR3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
PTCHD1Q96NR3 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
PTCHD1Q96NR3 AL359504.2-201ENST00000605506 1601 ntBASIC23.14■■□□□ 1.29
PTCHD1Q96NR3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms