Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.221e-6■■■■□ 20.5
SFPQP23246 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.21e-6■■■■□ 20.5
SFPQP23246 EPAS1-202ENST00000449347 1067 ntTSL 321.07■□□□□ 0.967e-7■■■■□ 20.4
SFPQP23246 EPAS1-207ENST00000467888 665 ntTSL 520.81■□□□□ 0.927e-7■■■■□ 20.4
SFPQP23246 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.187e-7■■■■□ 20.4
SFPQP23246 EPAS1-203ENST00000460015 558 ntTSL 415.94■□□□□ 0.147e-7■■■■□ 20.4
SFPQP23246 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.832e-7■■■■□ 20.4
SFPQP23246 SIN3A-212ENST00000568919 455 ntTSL 220.24■□□□□ 0.832e-7■■■■□ 20.4
SFPQP23246 SIN3A-206ENST00000565264 510 ntTSL 418.32■□□□□ 0.522e-7■■■■□ 20.4
SFPQP23246 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.142e-7■■■■□ 20.4
SFPQP23246 SIN3A-208ENST00000567289 4078 ntTSL 2 BASIC13.82□□□□□ -0.22e-7■■■■□ 20.4
SFPQP23246 SIN3A-214ENST00000570115 554 ntTSL 412.43□□□□□ -0.422e-7■■■■□ 20.4
SFPQP23246 SIN3A-204ENST00000562776 590 ntTSL 412.2□□□□□ -0.462e-7■■■■□ 20.4
SFPQP23246 SIN3A-201ENST00000360439 5050 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.612e-7■■■■□ 20.4
SFPQP23246 SIN3A-205ENST00000564778 617 ntTSL 210.78□□□□□ -0.682e-7■■■■□ 20.4
SFPQP23246 SIN3A-209ENST00000568190 567 ntTSL 49.17□□□□□ -0.942e-7■■■■□ 20.4
SFPQP23246 SIN3A-210ENST00000568309 549 ntTSL 48.93□□□□□ -0.982e-7■■■■□ 20.4
SFPQP23246 SIN3A-211ENST00000568431 565 ntTSL 58.4□□□□□ -1.062e-7■■■■□ 20.4
SFPQP23246 DENND5B-206ENST00000545147 566 ntTSL 225.54■■□□□ 1.689e-7■■■■□ 20.4
SFPQP23246 DENND5B-205ENST00000544698 643 ntTSL 324.23■■□□□ 1.479e-7■■■■□ 20.4
SFPQP23246 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.42■□□□□ 0.869e-7■■■■□ 20.4
SFPQP23246 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.379e-7■■■■□ 20.4
SFPQP23246 DENND5B-203ENST00000536562 4291 ntTSL 2 BASIC11.35□□□□□ -0.599e-7■■■■□ 20.4
SFPQP23246 CUX1-210ENST00000497815 947 ntTSL 213.12□□□□□ -0.311e-6■■■■□ 20.4
SFPQP23246 CUX1-202ENST00000292538 2930 ntTSL 1 (best) BASIC13.01□□□□□ -0.331e-6■■■■□ 20.4
SFPQP23246 CUX1-204ENST00000393824 2331 ntTSL 2 BASIC12.79□□□□□ -0.361e-6■■■■□ 20.4
SFPQP23246 CUX1-212ENST00000547394 2878 ntTSL 2 BASIC12.56□□□□□ -0.41e-6■■■■□ 20.4
SFPQP23246 CUX1-205ENST00000425244 2776 ntTSL 2 BASIC12.23□□□□□ -0.451e-6■■■■□ 20.4
SFPQP23246 CUX1-221ENST00000622516 2990 ntTSL 1 (best) BASIC12.08□□□□□ -0.481e-6■■■■□ 20.4
SFPQP23246 CUX1-203ENST00000360264 13762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.611e-6■■■■□ 20.4
SFPQP23246 CUX1-206ENST00000437600 3031 ntTSL 1 (best) BASIC10.81□□□□□ -0.681e-6■■■■□ 20.4
SFPQP23246 NECAB3-217ENST00000606106 591 ntTSL 421.88■■□□□ 1.092e-6■■■■□ 20.4
SFPQP23246 NECAB3-208ENST00000480994 732 ntTSL 518.87■□□□□ 0.612e-6■■■■□ 20.4
SFPQP23246 YWHAE-213ENST00000576854 1374 nt25.55■■□□□ 1.682e-6■■■■□ 20.4
SFPQP23246 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.52■□□□□ 0.232e-6■■■■□ 20.4
SFPQP23246 YWHAE-204ENST00000486241 691 ntTSL 216.47■□□□□ 0.232e-6■■■■□ 20.4
SFPQP23246 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.072e-6■■■■□ 20.4
SFPQP23246 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC14.36□□□□□ -0.112e-6■■■■□ 20.4
SFPQP23246 YWHAE-205ENST00000489287 465 ntTSL 212.37□□□□□ -0.432e-6■■■■□ 20.4
SFPQP23246 YWHAE-211ENST00000573196 739 ntTSL 211.49□□□□□ -0.572e-6■■■■□ 20.4
SFPQP23246 YWHAE-210ENST00000573026 780 ntTSL 3 BASIC11.49□□□□□ -0.572e-6■■■■□ 20.4
SFPQP23246 YWHAE-207ENST00000498643 312 ntTSL 311.2□□□□□ -0.622e-6■■■■□ 20.4
SFPQP23246 YWHAE-203ENST00000469398 676 ntTSL 210□□□□□ -0.812e-6■■■■□ 20.4
SFPQP23246 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.612e-8■■■■□ 20.3
SFPQP23246 TNFRSF10B-207ENST00000523504 1464 ntTSL 223.73■■□□□ 1.392e-8■■■■□ 20.3
SFPQP23246 TNFRSF10B-204ENST00000519028 612 ntTSL 222.67■■□□□ 1.222e-8■■■■□ 20.3
SFPQP23246 AC111170.3-201ENST00000624282 2464 ntBASIC16.37■□□□□ 0.215e-6■■■■□ 20.3
SFPQP23246 TNFRSF10B-201ENST00000276431 4146 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.252e-8■■■■□ 20.3
SFPQP23246 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.12e-6■■■■□ 20.3
SFPQP23246 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.662e-6■■■■□ 20.2
SFPQP23246 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.87■□□□□ 0.612e-6■■■■□ 20.2
SFPQP23246 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.012e-6■■■■□ 20.2
SFPQP23246 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.022e-6■■■■□ 20.2
SFPQP23246 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC27.51■■□□□ 1.993e-6■■■■□ 20.2
SFPQP23246 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.723e-6■■■■□ 20.2
SFPQP23246 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.49■■□□□ 1.673e-6■■■■□ 20.2
SFPQP23246 KLC1-216ENST00000554228 2555 ntTSL 523.13■■□□□ 1.293e-6■■■■□ 20.2
SFPQP23246 KLC1-209ENST00000535194 710 ntTSL 321.46■■□□□ 1.033e-6■■■■□ 20.2
SFPQP23246 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.56■□□□□ 0.723e-6■■■■□ 20.2
SFPQP23246 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.52■□□□□ 0.713e-6■■■■□ 20.2
SFPQP23246 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.15■□□□□ 0.663e-6■■■■□ 20.2
SFPQP23246 KLC1-210ENST00000537046 875 ntTSL 314.73□□□□□ -0.053e-6■■■■□ 20.2
SFPQP23246 KLC1-213ENST00000553325 976 ntTSL 211.05□□□□□ -0.643e-6■■■■□ 20.2
SFPQP23246 MAD1L1-215ENST00000464742 449 ntTSL 517.9■□□□□ 0.462e-6■■■■□ 20.1
SFPQP23246 THUMPD3-AS1-204ENST00000480904 493 ntTSL 35.56□□□□□ -1.521e-6■■■■□ 20.1
SFPQP23246 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.772e-6■■■■□ 20
SFPQP23246 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC16.36■□□□□ 0.214e-7■■■■□ 20
SFPQP23246 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC14.38□□□□□ -0.114e-7■■■■□ 20
SFPQP23246 USP7-212ENST00000566004 559 ntTSL 47.63□□□□□ -1.195e-7■■■■□ 19.9
SFPQP23246 USP7-207ENST00000563085 3194 ntTSL 26.83□□□□□ -1.325e-7■■■■□ 19.9
SFPQP23246 NEU4-211ENST00000435855 2281 ntTSL 224.97■■□□□ 1.591e-6■■■■□ 19.8
SFPQP23246 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.421e-6■■■■□ 19.8
SFPQP23246 NEU4-214ENST00000476542 536 ntTSL 223.65■■□□□ 1.381e-6■■■■□ 19.8
SFPQP23246 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.271e-6■■■■□ 19.8
SFPQP23246 NEU4-217ENST00000618597 3013 ntTSL 221.85■■□□□ 1.091e-6■■■■□ 19.8
SFPQP23246 NEU4-206ENST00000415936 860 ntTSL 320.09■□□□□ 0.811e-6■■■■□ 19.8
SFPQP23246 NEU4-208ENST00000423583 753 ntTSL 519.63■□□□□ 0.731e-6■■■■□ 19.8
SFPQP23246 MAD1L1-222ENST00000491858 494 ntTSL 414.52□□□□□ -0.092e-6■■■■□ 19.8
SFPQP23246 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.81■□□□□ 0.923e-6■■■■□ 19.8
SFPQP23246 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.773e-6■■■■□ 19.8
SFPQP23246 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC19.36■□□□□ 0.693e-6■■■■□ 19.8
SFPQP23246 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.392e-6■■■■□ 19.8
SFPQP23246 DLEU1-231ENST00000490577 2440 ntTSL 5 BASIC14.03□□□□□ -0.162e-6■■■■□ 19.7
SFPQP23246 DLEU1-208ENST00000468168 982 ntTSL 1 (best) BASIC12.8□□□□□ -0.362e-6■■■■□ 19.7
SFPQP23246 DLEU1-232ENST00000491341 1141 ntTSL 5 BASIC12.65□□□□□ -0.382e-6■■■■□ 19.7
SFPQP23246 DLEU1-219ENST00000476738 838 ntTSL 5 BASIC12.39□□□□□ -0.432e-6■■■■□ 19.7
SFPQP23246 DLEU1-207ENST00000467721 1455 ntTSL 5 BASIC11.96□□□□□ -0.492e-6■■■■□ 19.7
SFPQP23246 DLEU1-209ENST00000468522 1158 ntTSL 5 BASIC11.76□□□□□ -0.532e-6■■■■□ 19.7
SFPQP23246 DLEU1-234ENST00000491615 1451 ntTSL 5 BASIC11.24□□□□□ -0.612e-6■■■■□ 19.7
SFPQP23246 DLEU1-206ENST00000463474 1048 ntTSL 1 (best) BASIC10.66□□□□□ -0.72e-6■■■■□ 19.7
SFPQP23246 DLEU1-228ENST00000485007 736 ntTSL 59.81□□□□□ -0.842e-6■■■■□ 19.7
SFPQP23246 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.91■□□□□ 0.943e-6■■■■□ 19.7
SFPQP23246 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.453e-6■■■■□ 19.7
SFPQP23246 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.462e-6■■■■□ 19.7
SFPQP23246 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.222e-6■■■■□ 19.7
SFPQP23246 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.32■□□□□ 0.842e-6■■■■□ 19.7
SFPQP23246 SLC2A14-207ENST00000535383 665 ntTSL 219.68■□□□□ 0.742e-6■■■■□ 19.7
SFPQP23246 ZNF331-206ENST00000504033 578 ntTSL 517.54■□□□□ 0.42e-6■■■■□ 19.7
SFPQP23246 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.112e-6■■■■□ 19.7
SFPQP23246 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.052e-6■■■■□ 19.7
Retrieved 100 of 4,991 protein–RNA pairs in 97 ms