Protein–RNA interactions for Protein: Q9NZI7

UBP1, Upstream-binding protein 1, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBP1Q9NZI7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
UBP1Q9NZI7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
UBP1Q9NZI7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.52■□□□□ 0.55
UBP1Q9NZI7 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 RASA4DP-201ENST00000460726 1199 ntBASIC18.51■□□□□ 0.55
UBP1Q9NZI7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 AP000997.3-201ENST00000623333 2250 ntBASIC18.51■□□□□ 0.55
UBP1Q9NZI7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.51■□□□□ 0.55
UBP1Q9NZI7 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 AC068880.1-201ENST00000507289 2297 ntBASIC18.5■□□□□ 0.55
UBP1Q9NZI7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 RCN1P1-201ENST00000400413 996 ntBASIC18.5■□□□□ 0.55
UBP1Q9NZI7 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 SPDYE15P-201ENST00000424157 909 ntBASIC18.5■□□□□ 0.55
UBP1Q9NZI7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 RN7SL850P-201ENST00000579959 291 ntBASIC18.5■□□□□ 0.55
UBP1Q9NZI7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 AL031432.5-201ENST00000641059 760 ntBASIC18.5■□□□□ 0.55
UBP1Q9NZI7 AC138028.4-201ENST00000564984 1845 ntBASIC18.5■□□□□ 0.55
UBP1Q9NZI7 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 AC067852.2-201ENST00000590513 2313 ntBASIC18.5■□□□□ 0.55
UBP1Q9NZI7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBP1Q9NZI7 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.49■□□□□ 0.55
UBP1Q9NZI7 AC104076.2-201ENST00000448912 469 ntBASIC18.49■□□□□ 0.55
UBP1Q9NZI7 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 AC034232.1-201ENST00000506026 1064 ntBASIC18.49■□□□□ 0.55
UBP1Q9NZI7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 AC079602.3-201ENST00000623931 403 ntBASIC18.49■□□□□ 0.55
UBP1Q9NZI7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBP1Q9NZI7 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms