Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 TSPY12P-201ENST00000421279 868 ntBASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 AC093677.2-201ENST00000600169 1863 ntBASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 AC138894.3-201ENST00000603787 634 ntBASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SH3RF1Q7Z6J0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 BX640515.1-201ENST00000617215 977 ntBASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SH3RF1Q7Z6J0 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SH3RF1Q7Z6J0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 ESPNP-201ENST00000270691 2015 ntBASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms