Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 AC093010.1-201ENST00000473625 1624 ntBASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 AC138028.4-201ENST00000564984 1845 ntBASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC65Q8IXS2 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 STARP1-201ENST00000397973 869 ntBASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC65Q8IXS2 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 RNF152P1-201ENST00000397754 604 ntBASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms