Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.38■□□□□ 0.53
PTPN4P29074 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.38■□□□□ 0.53
PTPN4P29074 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN4P29074 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN4P29074 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.37■□□□□ 0.53
PTPN4P29074 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PTPN4P29074 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN4P29074 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN4P29074 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.37■□□□□ 0.53
PTPN4P29074 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 SLC25A3P1-201ENST00000443844 931 ntBASIC18.37■□□□□ 0.53
PTPN4P29074 AC011506.1-201ENST00000474329 610 ntBASIC18.37■□□□□ 0.53
PTPN4P29074 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 KRT18P35-201ENST00000510488 1269 ntBASIC18.37■□□□□ 0.53
PTPN4P29074 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PTPN4P29074 AP005242.2-201ENST00000580065 1175 ntBASIC18.37■□□□□ 0.53
PTPN4P29074 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.37■□□□□ 0.53
PTPN4P29074 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
PTPN4P29074 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.37■□□□□ 0.53
PTPN4P29074 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.37■□□□□ 0.53
PTPN4P29074 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN4P29074 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PTPN4P29074 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 TERF1P1-201ENST00000311003 1181 ntBASIC18.36■□□□□ 0.53
PTPN4P29074 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PTPN4P29074 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PTPN4P29074 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
PTPN4P29074 KRT18P57-201ENST00000443599 1254 ntBASIC18.36■□□□□ 0.53
PTPN4P29074 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.36■□□□□ 0.53
PTPN4P29074 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN4P29074 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN4P29074 AL645608.8-201ENST00000606034 2086 ntBASIC18.36■□□□□ 0.53
PTPN4P29074 AC084018.2-201ENST00000613093 2607 ntBASIC18.36■□□□□ 0.53
PTPN4P29074 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN4P29074 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN4P29074 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.36■□□□□ 0.53
PTPN4P29074 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PTPN4P29074 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
PTPN4P29074 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.35■□□□□ 0.53
PTPN4P29074 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.35■□□□□ 0.53
PTPN4P29074 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 ARMC10P1-201ENST00000313754 855 ntBASIC18.35■□□□□ 0.53
PTPN4P29074 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.35■□□□□ 0.53
PTPN4P29074 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PTPN4P29074 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.35■□□□□ 0.53
PTPN4P29074 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.35■□□□□ 0.53
PTPN4P29074 AC097488.1-201ENST00000507834 756 ntBASIC18.35■□□□□ 0.53
PTPN4P29074 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.35■□□□□ 0.53
PTPN4P29074 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PTPN4P29074 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.35■□□□□ 0.53
PTPN4P29074 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
PTPN4P29074 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PTPN4P29074 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms