Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.92■□□□□ 0.46
CDH3P22223 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.92■□□□□ 0.46
CDH3P22223 HEIH-201ENST00000623091 1652 ntBASIC17.92■□□□□ 0.46
CDH3P22223 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH3P22223 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH3P22223 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CDH3P22223 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH3P22223 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.92■□□□□ 0.46
CDH3P22223 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH3P22223 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
CDH3P22223 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDH3P22223 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.91■□□□□ 0.46
CDH3P22223 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CDH3P22223 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.91■□□□□ 0.46
CDH3P22223 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CDH3P22223 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.91■□□□□ 0.46
CDH3P22223 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.91■□□□□ 0.46
CDH3P22223 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.91■□□□□ 0.46
CDH3P22223 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.91■□□□□ 0.46
CDH3P22223 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.91■□□□□ 0.46
CDH3P22223 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
CDH3P22223 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.91■□□□□ 0.46
CDH3P22223 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.91■□□□□ 0.46
CDH3P22223 AL121956.5-201ENST00000625261 221 ntBASIC17.91■□□□□ 0.46
CDH3P22223 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CDH3P22223 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.91■□□□□ 0.46
CDH3P22223 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CDH3P22223 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDH3P22223 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CDH3P22223 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 LINC01311-201ENST00000565162 1445 ntBASIC17.9■□□□□ 0.46
CDH3P22223 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.9■□□□□ 0.46
CDH3P22223 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.9■□□□□ 0.46
CDH3P22223 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
CDH3P22223 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.9■□□□□ 0.46
CDH3P22223 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CDH3P22223 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CDH3P22223 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.9■□□□□ 0.46
CDH3P22223 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.9■□□□□ 0.46
CDH3P22223 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.9■□□□□ 0.46
CDH3P22223 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.9■□□□□ 0.46
CDH3P22223 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.9■□□□□ 0.46
CDH3P22223 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.9■□□□□ 0.46
CDH3P22223 AL358472.4-201ENST00000633140 710 ntBASIC17.9■□□□□ 0.46
CDH3P22223 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDH3P22223 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.9■□□□□ 0.46
CDH3P22223 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CDH3P22223 HOXB1-202ENST00000577092 1414 ntBASIC17.89■□□□□ 0.46
CDH3P22223 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CDH3P22223 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDH3P22223 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDH3P22223 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.89■□□□□ 0.45
CDH3P22223 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDH3P22223 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CDH3P22223 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDH3P22223 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.89■□□□□ 0.45
CDH3P22223 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.89■□□□□ 0.45
CDH3P22223 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDH3P22223 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDH3P22223 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CDH3P22223 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms