Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 AL162741.1-201ENST00000565563 1558 ntBASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 MIR718-201ENST00000390190 70 ntBASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 CRYGFP-201ENST00000418459 633 ntBASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 AC012618.2-201ENST00000428058 849 ntBASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 REXO1L9P-201ENST00000604264 2108 ntBASIC18.7■□□□□ 0.58
TRIM56Q9BRZ2 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 AC008764.6-201ENST00000595909 2069 ntBASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 DGCR10-201ENST00000609839 495 ntBASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM56Q9BRZ2 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 MIR564-202ENST00000385049 94 ntBASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 AC026471.5-201ENST00000615068 467 ntBASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms