Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
YBX1P67809 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.87■□□□□ 0.45
YBX1P67809 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.87■□□□□ 0.45
YBX1P67809 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.87■□□□□ 0.45
YBX1P67809 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
YBX1P67809 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.87■□□□□ 0.45
YBX1P67809 AK4P3-201ENST00000418260 669 ntBASIC17.87■□□□□ 0.45
YBX1P67809 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.87■□□□□ 0.45
YBX1P67809 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.87■□□□□ 0.45
YBX1P67809 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.87■□□□□ 0.45
YBX1P67809 AC112497.1-201ENST00000624824 639 ntBASIC17.87■□□□□ 0.45
YBX1P67809 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
YBX1P67809 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.87■□□□□ 0.45
YBX1P67809 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.87■□□□□ 0.45
YBX1P67809 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.87■□□□□ 0.45
YBX1P67809 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
YBX1P67809 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
YBX1P67809 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
YBX1P67809 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
YBX1P67809 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
YBX1P67809 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 DUX4L26-201ENST00000489078 1255 ntBASIC17.86■□□□□ 0.45
YBX1P67809 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 NEK4P2-201ENST00000580004 1012 ntBASIC17.86■□□□□ 0.45
YBX1P67809 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.86■□□□□ 0.45
YBX1P67809 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 HOXB1-202ENST00000577092 1414 ntBASIC17.86■□□□□ 0.45
YBX1P67809 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.86■□□□□ 0.45
YBX1P67809 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
YBX1P67809 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.86■□□□□ 0.45
YBX1P67809 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
YBX1P67809 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.86■□□□□ 0.45
YBX1P67809 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.85■□□□□ 0.45
YBX1P67809 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.85■□□□□ 0.45
YBX1P67809 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.85■□□□□ 0.45
YBX1P67809 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
YBX1P67809 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 KRT18P38-201ENST00000449496 1282 ntBASIC17.85■□□□□ 0.45
YBX1P67809 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.85■□□□□ 0.45
YBX1P67809 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
YBX1P67809 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.85■□□□□ 0.45
YBX1P67809 AC140113.3-201ENST00000605663 199 ntBASIC17.85■□□□□ 0.45
YBX1P67809 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
YBX1P67809 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
YBX1P67809 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
YBX1P67809 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
YBX1P67809 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
YBX1P67809 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms