Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
RPS28P62857 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
RPS28P62857 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
RPS28P62857 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
RPS28P62857 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC10.59□□□□□ -0.71
RPS28P62857 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC10.59□□□□□ -0.71
RPS28P62857 AC005840.4-201ENST00000541242 2494 ntBASIC10.59□□□□□ -0.71
RPS28P62857 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
RPS28P62857 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC10.59□□□□□ -0.71
RPS28P62857 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC10.59□□□□□ -0.71
RPS28P62857 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
RPS28P62857 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
RPS28P62857 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC10.58□□□□□ -0.72
RPS28P62857 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
RPS28P62857 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC10.58□□□□□ -0.72
RPS28P62857 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
RPS28P62857 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC10.58□□□□□ -0.72
RPS28P62857 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC10.58□□□□□ -0.72
RPS28P62857 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC10.58□□□□□ -0.72
RPS28P62857 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
RPS28P62857 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC10.58□□□□□ -0.72
RPS28P62857 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
RPS28P62857 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 AC007686.3-201ENST00000619017 3487 ntBASIC10.57□□□□□ -0.72
RPS28P62857 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC10.57□□□□□ -0.72
RPS28P62857 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC10.57□□□□□ -0.72
RPS28P62857 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC10.57□□□□□ -0.72
RPS28P62857 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC10.57□□□□□ -0.72
RPS28P62857 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
RPS28P62857 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
RPS28P62857 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
RPS28P62857 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 AC106881.1-201ENST00000605849 3329 ntBASIC10.57□□□□□ -0.72
RPS28P62857 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
RPS28P62857 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC10.57□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms