Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PAICS-207ENST00000512576 6480 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.851e-6■□□□□ 10.4
DDX55Q8NHQ9 PAICS-202ENST00000399688 3297 ntTSL 1 (best) BASIC8.88□□□□□ -0.991e-6■□□□□ 10.4
DDX55Q8NHQ9 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC8□□□□□ -1.131e-6■□□□□ 10.4
DDX55Q8NHQ9 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.331e-6■□□□□ 10.4
DDX55Q8NHQ9 ITIH3-209ENST00000493136 2179 ntTSL 216.51■□□□□ 0.236e-23■□□□□ 10.4
DDX55Q8NHQ9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.435e-33■□□□□ 10.4
DDX55Q8NHQ9 UBAC1-206ENST00000489050 864 ntTSL 312.27□□□□□ -0.455e-33■□□□□ 10.4
DDX55Q8NHQ9 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.8■□□□□ 0.443e-6■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC26.19■■□□□ 1.787e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC23.27■■□□□ 1.327e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-224ENST00000581718 574 ntTSL 223.24■■□□□ 1.317e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-229ENST00000584177 574 ntTSL 420.48■□□□□ 0.877e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC17.31■□□□□ 0.367e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC16.46■□□□□ 0.231e-70■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-206ENST00000477249 891 ntTSL 516.04■□□□□ 0.167e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-217ENST00000497774 1662 ntTSL 515.38■□□□□ 0.057e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-227ENST00000583400 712 ntTSL 412.51□□□□□ -0.417e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-222ENST00000580770 572 ntTSL 412.47□□□□□ -0.417e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-223ENST00000581361 843 ntTSL 1 (best) BASIC12.1□□□□□ -0.477e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-221ENST00000580180 753 ntTSL 211.36□□□□□ -0.597e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC10.04□□□□□ -0.87e-50■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-210ENST00000481898 993 ntTSL 1 (best)9.64□□□□□ -0.877e-50■□□□□ 10.4
DDX55Q8NHQ9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.991e-7■□□□□ 10.4
DDX55Q8NHQ9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.861e-7■□□□□ 10.4
DDX55Q8NHQ9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.69■□□□□ 0.91e-7■□□□□ 10.4
DDX55Q8NHQ9 EIF6-205ENST00000440766 798 ntTSL 220.24■□□□□ 0.831e-7■□□□□ 10.4
DDX55Q8NHQ9 EIF6-206ENST00000447927 932 ntTSL 1 (best)20.24■□□□□ 0.831e-7■□□□□ 10.4
DDX55Q8NHQ9 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.721e-7■□□□□ 10.4
DDX55Q8NHQ9 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.711e-7■□□□□ 10.4
DDX55Q8NHQ9 METTL26-210ENST00000565799 716 ntTSL 326.42■■□□□ 1.824e-8■□□□□ 10.4
DDX55Q8NHQ9 HSF1-205ENST00000528842 935 ntTSL 224.45■■□□□ 1.52e-8■□□□□ 10.4
DDX55Q8NHQ9 METTL26-213ENST00000568830 590 ntTSL 323.04■■□□□ 1.284e-8■□□□□ 10.4
DDX55Q8NHQ9 METTL26-208ENST00000564039 518 ntTSL 221.19■□□□□ 0.987e-14■□□□□ 10.4
DDX55Q8NHQ9 HSF1-208ENST00000530661 552 ntTSL 311.11□□□□□ -0.632e-8■□□□□ 10.4
DDX55Q8NHQ9 EIF4A1-228ENST00000583389 951 ntTSL 317.36■□□□□ 0.376e-22■□□□□ 10.4
DDX55Q8NHQ9 PSMB3-207ENST00000610434 510 ntTSL 313.7□□□□□ -0.223e-7■□□□□ 10.4
DDX55Q8NHQ9 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.025e-7■□□□□ 10.4
DDX55Q8NHQ9 MAD2L2-208ENST00000445656 678 ntTSL 326.76■■□□□ 1.873e-7■□□□□ 10.4
DDX55Q8NHQ9 MAD2L2-209ENST00000456915 1032 ntTSL 226.7■■□□□ 1.863e-7■□□□□ 10.4
DDX55Q8NHQ9 MAD2L2-203ENST00000376664 858 ntTSL 226.21■■□□□ 1.793e-7■□□□□ 10.4
DDX55Q8NHQ9 MAD2L2-202ENST00000376655 1095 ntTSL 223.47■■□□□ 1.353e-7■□□□□ 10.4
DDX55Q8NHQ9 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.4■□□□□ 0.222e-7■□□□□ 10.3
DDX55Q8NHQ9 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.2■□□□□ 0.182e-7■□□□□ 10.3
DDX55Q8NHQ9 LDLR-203ENST00000535915 2768 ntTSL 2 BASIC13.92□□□□□ -0.182e-7■□□□□ 10.3
DDX55Q8NHQ9 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.252e-7■□□□□ 10.3
DDX55Q8NHQ9 LDLR-214ENST00000560628 535 ntTSL 312.68□□□□□ -0.382e-7■□□□□ 10.3
DDX55Q8NHQ9 LDLR-205ENST00000557933 2941 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.392e-7■□□□□ 10.3
DDX55Q8NHQ9 LDLR-208ENST00000558518 3617 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.522e-7■□□□□ 10.3
DDX55Q8NHQ9 VPS28-212ENST00000530836 1613 ntTSL 524.64■■□□□ 1.537e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-208ENST00000527797 1609 ntTSL 524.16■■□□□ 1.467e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-209ENST00000528142 1821 ntTSL 323.15■■□□□ 1.37e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-205ENST00000526204 2120 ntTSL 522.45■■□□□ 1.187e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-207ENST00000526977 2036 ntTSL 521.69■■□□□ 1.067e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-213ENST00000530983 2337 ntTSL 520.04■□□□□ 0.87e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.187e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC16.16■□□□□ 0.187e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC16.16■□□□□ 0.187e-9■□□□□ 10.3
DDX55Q8NHQ9 VPS28-204ENST00000526054 892 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.417e-9■□□□□ 10.3
DDX55Q8NHQ9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.378e-7■□□□□ 10.3
DDX55Q8NHQ9 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.298e-7■□□□□ 10.3
DDX55Q8NHQ9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC22■■□□□ 1.118e-7■□□□□ 10.3
DDX55Q8NHQ9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC30.1■■■□□ 2.411e-7■□□□□ 10.3
DDX55Q8NHQ9 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.76■■□□□ 1.071e-7■□□□□ 10.3
DDX55Q8NHQ9 FCGRT-208ENST00000595881 2681 ntTSL 221.45■■□□□ 1.021e-7■□□□□ 10.3
DDX55Q8NHQ9 FCGRT-214ENST00000598927 1616 ntTSL 521.09■□□□□ 0.971e-7■□□□□ 10.3
DDX55Q8NHQ9 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.891e-7■□□□□ 10.3
DDX55Q8NHQ9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.761e-7■□□□□ 10.3
DDX55Q8NHQ9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.86■■■□□ 2.692e-6■□□□□ 10.3
DDX55Q8NHQ9 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.652e-6■□□□□ 10.3
DDX55Q8NHQ9 CPNE1-204ENST00000397443 1928 ntAPPRIS P1 TSL 524.6■■□□□ 1.532e-6■□□□□ 10.3
DDX55Q8NHQ9 CPNE1-224ENST00000483359 1975 ntTSL 521.23■□□□□ 0.992e-6■□□□□ 10.3
DDX55Q8NHQ9 CPNE1-225ENST00000483495 1853 ntTSL 514.72□□□□□ -0.052e-6■□□□□ 10.3
DDX55Q8NHQ9 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC14.45□□□□□ -0.12e-6■□□□□ 10.3
DDX55Q8NHQ9 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.94■■□□□ 1.14e-18■□□□□ 10.3
DDX55Q8NHQ9 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC34.09■■■■□ 3.054e-10■□□□□ 10.3
DDX55Q8NHQ9 SMDT1-203ENST00000484235 556 ntTSL 1 (best)32.24■■■□□ 2.754e-10■□□□□ 10.3
DDX55Q8NHQ9 SMDT1-202ENST00000422252 591 ntTSL 231.55■■■□□ 2.644e-10■□□□□ 10.3
DDX55Q8NHQ9 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.564e-10■□□□□ 10.3
DDX55Q8NHQ9 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.25■■■□□ 2.117e-8■□□□□ 10.3
DDX55Q8NHQ9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.989e-7■□□□□ 10.3
DDX55Q8NHQ9 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC26.37■■□□□ 1.819e-7■□□□□ 10.3
DDX55Q8NHQ9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.819e-7■□□□□ 10.3
DDX55Q8NHQ9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.689e-7■□□□□ 10.3
DDX55Q8NHQ9 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC24.67■■□□□ 1.544e-10■□□□□ 10.3
DDX55Q8NHQ9 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.548e-13■□□□□ 10.3
DDX55Q8NHQ9 PSMG1-203ENST00000411828 959 ntTSL 324.58■■□□□ 1.539e-7■□□□□ 10.3
DDX55Q8NHQ9 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.36■■□□□ 1.499e-7■□□□□ 10.3
DDX55Q8NHQ9 MVB12A-202ENST00000524382 908 ntTSL 224.16■■□□□ 1.469e-7■□□□□ 10.3
DDX55Q8NHQ9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC24.13■■□□□ 1.459e-7■□□□□ 10.3
DDX55Q8NHQ9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC24.06■■□□□ 1.444e-13■□□□□ 10.3
DDX55Q8NHQ9 YPEL3-208ENST00000566401 522 ntTSL 324.01■■□□□ 1.432e-8■□□□□ 10.3
DDX55Q8NHQ9 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.429e-7■□□□□ 10.3
DDX55Q8NHQ9 MVB12A-213ENST00000594784 705 ntTSL 523.93■■□□□ 1.429e-7■□□□□ 10.3
DDX55Q8NHQ9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.194e-10■□□□□ 10.3
DDX55Q8NHQ9 CD151-220ENST00000532045 1803 ntTSL 522.02■■□□□ 1.124e-10■□□□□ 10.3
DDX55Q8NHQ9 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.054e-10■□□□□ 10.3
DDX55Q8NHQ9 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC21.09■□□□□ 0.979e-7■□□□□ 10.3
DDX55Q8NHQ9 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.07■□□□□ 0.969e-7■□□□□ 10.3
DDX55Q8NHQ9 PSMG1-204ENST00000431628 760 ntTSL 1 (best)21■□□□□ 0.959e-7■□□□□ 10.3
DDX55Q8NHQ9 ATG13-206ENST00000526485 637 ntTSL 520.84■□□□□ 0.939e-7■□□□□ 10.3
Retrieved 100 of 15,504 protein–RNA pairs in 109.5 ms