RNA–Protein interactions for RNA: ENST00000422252.1

SMDT1-202, Transcript of single-pass membrane protein with aspartate rich tail 1, humanhuman

TSL 2

Gene SMDT1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMDT1-202ENST00000422252 NISCHQ9Y2I1 1504 aa63.18■■■■■ 7.7
SMDT1-202ENST00000422252 CCDC180Q9P1Z9 1646 aa56.48■■■■■ 6.63
SMDT1-202ENST00000422252 ABCC9O60706 1549 aa56.01■■■■■ 6.56
SMDT1-202ENST00000422252 RB1CC1Q8TDY2 1594 aa53.54■■■■■ 6.16
SMDT1-202ENST00000422252 NACADO15069 1562 aa53.3■■■■■ 6.12
SMDT1-202ENST00000422252 DCAF8L2P0C7V8 631 aa53.12■■■■■ 6.09
SMDT1-202ENST00000422252 MYO15BQ96JP2 1530 aa52.74■■■■■ 6.03
SMDT1-202ENST00000422252 ZCCHC6Q5VYS8 1495 aaKnown RBP52.48■■■■■ 5.99
SMDT1-202ENST00000422252 UNC13AQ9UPW8 1703 aa52.28■■■■■ 5.96
SMDT1-202ENST00000422252 DCAF1Q9Y4B6 1507 aa52.24■■■■■ 5.95
SMDT1-202ENST00000422252 PABPN1Q86U42 306 aaKnown RBP eCLIP52.22■■■■■ 5.95
SMDT1-202ENST00000422252 DNAJC5BQ9UF47 199 aa52.09■■■■■ 5.93
SMDT1-202ENST00000422252 BICRAQ9NZM4 1560 aa51.94■■■■■ 5.91
SMDT1-202ENST00000422252 SCRIBQ14160 1630 aa51.49■■■■■ 5.83
SMDT1-202ENST00000422252 SHROOM4Q9ULL8 1493 aa51.34■■■■■ 5.81
SMDT1-202ENST00000422252 EIF4G1Q04637 1599 aaKnown RBP50.64■■■■■ 5.7
SMDT1-202ENST00000422252 CC2D2AQ9P2K1 1620 aa50.62■■■■■ 5.69
SMDT1-202ENST00000422252 CECR2Q9BXF3 1484 aa50.41■■■■■ 5.66
SMDT1-202ENST00000422252 NCAPD3P42695 1498 aa49.2■■■■■ 5.47
SMDT1-202ENST00000422252 SMARCA4P51532 1647 aa49.18■■■■■ 5.46
SMDT1-202ENST00000422252 ATAD2BQ9ULI0 1458 aa49.12■■■■■ 5.45
SMDT1-202ENST00000422252 BAZ1AQ9NRL2 1556 aaPredicted RBP49.02■■■■■ 5.44
SMDT1-202ENST00000422252 SMARCA2P51531 1590 aa49.01■■■■■ 5.44
SMDT1-202ENST00000422252 HMGXB3Q12766 1538 aa48.88■■■■■ 5.42
SMDT1-202ENST00000422252 PEG3Q9GZU2 1588 aa48.71■■■■■ 5.39
SMDT1-202ENST00000422252 MROH2BQ7Z745 1585 aa48.68■■■■■ 5.38
SMDT1-202ENST00000422252 BAZ1BQ9UIG0 1483 aaKnown RBP48.67■■■■■ 5.38
SMDT1-202ENST00000422252 ERCC6Q03468 1493 aa48.34■■■■■ 5.33
SMDT1-202ENST00000422252 NESP48681 1621 aa48.24■■■■■ 5.31
SMDT1-202ENST00000422252 WIZO95785 1651 aa48.11■■■■■ 5.29
SMDT1-202ENST00000422252 CUX2O14529 1486 aa48.1■■■■■ 5.29
SMDT1-202ENST00000422252 LAMC3Q9Y6N6 1575 aa48.01■■■■■ 5.28
SMDT1-202ENST00000422252 RSF1Q96T23 1441 aaPredicted RBP47.87■■■■■ 5.25
SMDT1-202ENST00000422252 CADPSQ9ULU8 1353 aa47.74■■■■■ 5.23
SMDT1-202ENST00000422252 PDS5BQ9NTI5 1447 aa47.73■■■■■ 5.23
SMDT1-202ENST00000422252 THOC2Q8NI27 1593 aaKnown RBP47.66■■■■■ 5.22
SMDT1-202ENST00000422252 KIF21AQ7Z4S6 1674 aa47.63■■■■■ 5.21
SMDT1-202ENST00000422252 TOP2AP11388 1531 aaKnown RBP47.56■■■■■ 5.2
SMDT1-202ENST00000422252 DNAJC5Q9H3Z4 198 aa47.49■■■■■ 5.19
SMDT1-202ENST00000422252 CFTRP13569 1480 aa47.29■■■■■ 5.16
SMDT1-202ENST00000422252 MRC2Q9UBG0 1479 aa47.28■■■■■ 5.16
SMDT1-202ENST00000422252 FANCD2Q9BXW9 1451 aa47.19■■■■■ 5.14
SMDT1-202ENST00000422252 CEP164Q9UPV0 1460 aa47.19■■■■■ 5.14
SMDT1-202ENST00000422252 WDR62O43379 1518 aa47.15■■■■■ 5.14
SMDT1-202ENST00000422252 CCDC88BA6NC98 1476 aa47.02■■■■■ 5.12
SMDT1-202ENST00000422252 PRDM2Q13029 1718 aa46.82■■■■■ 5.09
SMDT1-202ENST00000422252 URB2Q14146 1524 aaKnown RBP46.75■■■■■ 5.07
SMDT1-202ENST00000422252 TOPBP1Q92547 1522 aa46.34■■■■■ 5.01
SMDT1-202ENST00000422252 ABCC8Q09428 1581 aa46.3■■■■■ 5
SMDT1-202ENST00000422252 IFT140Q96RY7 1462 aa46.24■■■■■ 4.99
SMDT1-202ENST00000422252 DNMBPQ6XZF7 1577 aa46.22■■■■■ 4.99
SMDT1-202ENST00000422252 SUPT5HO00267 1087 aaKnown RBP46.11■■■■■ 4.97
SMDT1-202ENST00000422252 ZNF608Q9ULD9 1512 aaPredicted RBP46.09■■■■■ 4.97
SMDT1-202ENST00000422252 OSCARQ8IYS5 282 aa45.98■■■■■ 4.95
SMDT1-202ENST00000422252 POLA1P09884 1462 aaPredicted RBP45.9■■■■■ 4.94
SMDT1-202ENST00000422252 TARBP1Q13395 1621 aaKnown RBP45.88■■■■■ 4.93
SMDT1-202ENST00000422252 EIF4G3O43432 1585 aaKnown RBP45.86■■■■■ 4.93
SMDT1-202ENST00000422252 AQRO60306 1485 aaKnown RBP eCLIP45.75■■■■■ 4.91
SMDT1-202ENST00000422252 RAD54L2Q9Y4B4 1467 aa45.72■■■■■ 4.91
SMDT1-202ENST00000422252 CUX1P39880 1505 aa45.72■■■■■ 4.91
SMDT1-202ENST00000422252 SOGA1O94964 1423 aa45.7■■■■■ 4.91
SMDT1-202ENST00000422252 FGD5Q6ZNL6 1462 aa45.68■■■■■ 4.9
SMDT1-202ENST00000422252 TRIM41Q8WV44 630 aa45.62■■■■■ 4.89
SMDT1-202ENST00000422252 TDRD9Q8NDG6 1382 aaKnown RBP45.55■■■■■ 4.88
SMDT1-202ENST00000422252 WDR97A6NE52 1622 aa45.48■■■■■ 4.87
SMDT1-202ENST00000422252 CHD1O14646 1710 aa45.4■■■■■ 4.86
SMDT1-202ENST00000422252 FBLN2P98095 1184 aa45.36■■■■■ 4.85
SMDT1-202ENST00000422252 RIMBP3CA6NJZ7 1639 aa45.3■■■■■ 4.84
SMDT1-202ENST00000422252 RIMBP3BA6NNM3 1639 aa45.3■■■■■ 4.84
SMDT1-202ENST00000422252 RIMBP3Q9UFD9 1639 aa45.3■■■■■ 4.84
SMDT1-202ENST00000422252 SNAPC4Q5SXM2 1469 aa45.29■■■■■ 4.84
SMDT1-202ENST00000422252 GRIN2BQ13224 1484 aa45.26■■■■■ 4.84
SMDT1-202ENST00000422252 ARHGEF11O15085 1522 aa45.22■■■■■ 4.83
SMDT1-202ENST00000422252 MAGI1Q96QZ7 1491 aaPredicted RBP45.21■■■■■ 4.83
SMDT1-202ENST00000422252 ABCA10Q8WWZ4 1543 aa45.21■■■■■ 4.83
SMDT1-202ENST00000422252 GAPVD1Q14C86 1478 aa45.17■■■■■ 4.82
SMDT1-202ENST00000422252 WRNQ14191 1432 aaPredicted RBP eCLIP45.16■■■■■ 4.82
SMDT1-202ENST00000422252 TOP2BQ02880 1626 aa45.12■■■■■ 4.81
SMDT1-202ENST00000422252 CHMP7Q8WUX9 453 aaPredicted RBP45.12■■■■■ 4.81
SMDT1-202ENST00000422252 BIVM-ERCC5R4GMW8 1640 aa45.11■■■■■ 4.81
SMDT1-202ENST00000422252 PBRM1Q86U86 1689 aa45.09■■■■■ 4.81
SMDT1-202ENST00000422252 ABCA5Q8WWZ7 1642 aa45.07■■■■■ 4.81
SMDT1-202ENST00000422252 SYNJ1O43426 1573 aa45.07■■■■■ 4.8
SMDT1-202ENST00000422252 SYNJ2O15056 1496 aa45.05■■■■■ 4.8
SMDT1-202ENST00000422252 CLASP1Q7Z460 1538 aa44.93■■■■■ 4.78
SMDT1-202ENST00000422252 CYB5RLQ6IPT4 315 aa44.86■■■■■ 4.77
SMDT1-202ENST00000422252 ARAP1Q96P48 1450 aa44.81■■■■■ 4.76
SMDT1-202ENST00000422252 ADAMTS12P58397 1594 aa44.7■■■■■ 4.75
SMDT1-202ENST00000422252 GRIN2AQ12879 1464 aa44.67■■■■■ 4.74
SMDT1-202ENST00000422252 ERICH3Q5RHP9 1530 aa44.65■■■■■ 4.74
SMDT1-202ENST00000422252 FHAD1B1AJZ9 1412 aa44.61■■■■■ 4.73
SMDT1-202ENST00000422252 NUP160Q12769 1436 aa44.51■■■■■ 4.72
SMDT1-202ENST00000422252 CEP170Q5SW79 1584 aa44.48■■■■■ 4.71
SMDT1-202ENST00000422252 KIF27Q86VH2 1401 aa44.27■■■■■ 4.68
SMDT1-202ENST00000422252 ERCC6L2Q5T890 1561 aa44.25■■■■■ 4.67
SMDT1-202ENST00000422252 SHROOM2Q13796 1616 aa44.24■■■■■ 4.67
SMDT1-202ENST00000422252 TRHP20396 242 aaPredicted RBP44.21■■■■■ 4.67
SMDT1-202ENST00000422252 IGF1RP08069 1367 aa44.19■■■■■ 4.67
SMDT1-202ENST00000422252 CUL7Q14999 1698 aa44.09■■■■■ 4.65
SMDT1-202ENST00000422252 RUSC2Q8N2Y8 1516 aa44.06■■■■■ 4.64
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms