Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SSRP1-203ENST00000526696 948 ntTSL 320.16■□□□□ 0.823e-7■■□□□ 13.3
YBX3P16989 ACLY-205ENST00000588547 471 ntTSL 313.55□□□□□ -0.241e-15■■□□□ 13.3
YBX3P16989 PLP2-201ENST00000376322 620 ntTSL 2 BASIC15.88■□□□□ 0.131e-11■■□□□ 13.3
YBX3P16989 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.324e-54■■□□□ 13.3
YBX3P16989 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.284e-54■■□□□ 13.3
YBX3P16989 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.054e-54■■□□□ 13.3
YBX3P16989 PRKDC-210ENST00000541488 719 ntTSL 38.42□□□□□ -1.064e-13■■□□□ 13.3
YBX3P16989 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.85■□□□□ 0.291e-10■■□□□ 13.3
YBX3P16989 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.081e-10■■□□□ 13.3
YBX3P16989 KDELR2-205ENST00000463747 376 ntTSL 515.19■□□□□ 0.021e-10■■□□□ 13.3
YBX3P16989 GLE1-203ENST00000494417 778 ntTSL 514□□□□□ -0.174e-9■■□□□ 13.3
YBX3P16989 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC9.3□□□□□ -0.921e-27■■□□□ 13.3
YBX3P16989 AC087380.1-201ENST00000420465 1001 ntTSL 39.3□□□□□ -0.921e-27■■□□□ 13.3
YBX3P16989 SF3B6-201ENST00000233468 770 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.022e-11■■□□□ 13.3
YBX3P16989 SF3B6-202ENST00000478050 720 ntTSL 25.95□□□□□ -1.462e-11■■□□□ 13.3
YBX3P16989 RHBDD2-208ENST00000468644 555 ntTSL 416.34■□□□□ 0.212e-9■■□□□ 13.3
YBX3P16989 RHBDD2-205ENST00000466232 566 ntTSL 412.2□□□□□ -0.462e-9■■□□□ 13.3
YBX3P16989 UCP2-207ENST00000543714 567 ntTSL 218.84■□□□□ 0.612e-13■■□□□ 13.3
YBX3P16989 UCP2-204ENST00000539764 464 ntTSL 36.85□□□□□ -1.312e-13■■□□□ 13.3
YBX3P16989 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.381e-6■■□□□ 13.3
YBX3P16989 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.143e-8■■□□□ 13.3
YBX3P16989 ALDH1A2-204ENST00000537372 3700 ntTSL 2 BASIC14.59□□□□□ -0.073e-8■■□□□ 13.3
YBX3P16989 ALDH1A2-202ENST00000347587 3297 ntTSL 1 (best) BASIC11.09□□□□□ -0.633e-8■■□□□ 13.3
YBX3P16989 ALDH1A2-203ENST00000430119 3049 ntTSL 210.06□□□□□ -0.83e-8■■□□□ 13.3
YBX3P16989 RPS24-211ENST00000480662 711 ntTSL 212.57□□□□□ -0.45e-49■■□□□ 13.3
YBX3P16989 AL662899.3-203ENST00000409691 1903 ntTSL 316.86■□□□□ 0.293e-20■■□□□ 13.3
YBX3P16989 H2AFY-214ENST00000508962 293 ntTSL 314.9□□□□□ -0.029e-12■■□□□ 13.3
YBX3P16989 RPLP0-211ENST00000548495 651 ntTSL 311.91□□□□□ -0.53e-88■■□□□ 13.3
YBX3P16989 GPS1-213ENST00000580723 594 ntTSL 422.82■■□□□ 1.243e-7■■□□□ 13.3
YBX3P16989 GPS1-212ENST00000580716 567 ntTSL 422.53■■□□□ 1.23e-7■■□□□ 13.3
YBX3P16989 GPS1-219ENST00000583641 795 ntTSL 219.56■□□□□ 0.723e-7■■□□□ 13.3
YBX3P16989 PSMC5-218ENST00000584657 576 ntTSL 210.42□□□□□ -0.744e-7■■□□□ 13.3
YBX3P16989 RPL32-208ENST00000457131 555 ntTSL 27.83□□□□□ -1.163e-49■■□□□ 13.3
YBX3P16989 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.639e-19■■□□□ 13.3
YBX3P16989 CDK6-201ENST00000265734 11612 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.766e-7■■□□□ 13.3
YBX3P16989 MAP4-211ENST00000462206 572 ntTSL 45.76□□□□□ -1.493e-11■■□□□ 13.3
YBX3P16989 DHCR7-212ENST00000534795 979 ntTSL 1 (best)16.93■□□□□ 0.36e-7■■□□□ 13.3
YBX3P16989 MEAF6-209ENST00000487792 832 ntTSL 325.71■■□□□ 1.712e-7■■□□□ 13.3
YBX3P16989 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.371e-15■■□□□ 13.3
YBX3P16989 HBA2-203ENST00000482565 640 ntTSL 1 (best)23.51■■□□□ 1.351e-15■■□□□ 13.3
YBX3P16989 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.022e-7■■□□□ 13.3
YBX3P16989 HBA2-202ENST00000397806 513 ntTSL 2 BASIC15.09■□□□□ 0.011e-15■■□□□ 13.3
YBX3P16989 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC15.01□□□□□ -0.012e-7■■□□□ 13.3
YBX3P16989 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC14.99□□□□□ -0.012e-7■■□□□ 13.3
YBX3P16989 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.032e-7■■□□□ 13.3
YBX3P16989 ARHGAP21-207ENST00000446003 3859 ntTSL 1 (best)13.5□□□□□ -0.252e-7■■□□□ 13.3
YBX3P16989 ARHGAP21-203ENST00000396432 7167 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.452e-7■■□□□ 13.3
YBX3P16989 MEAF6-207ENST00000485039 814 ntTSL 29.15□□□□□ -0.942e-7■■□□□ 13.3
YBX3P16989 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC7.44□□□□□ -1.222e-7■■□□□ 13.3
YBX3P16989 EPS15-209ENST00000493793 987 ntTSL 57.44□□□□□ -1.222e-7■■□□□ 13.3
YBX3P16989 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC7.19□□□□□ -1.262e-7■■□□□ 13.3
YBX3P16989 DROSHA-209ENST00000509608 409 ntTSL 36.64□□□□□ -1.352e-7■■□□□ 13.3
YBX3P16989 DROSHA-205ENST00000505601 552 ntTSL 45.98□□□□□ -1.452e-7■■□□□ 13.3
YBX3P16989 DROSHA-206ENST00000507174 572 ntTSL 45.88□□□□□ -1.472e-7■■□□□ 13.3
YBX3P16989 KCMF1-203ENST00000453448 625 ntTSL 35.54□□□□□ -1.521e-11■■□□□ 13.3
YBX3P16989 ARHGAP21-215ENST00000486374 6846 ntTSL 25.54□□□□□ -1.522e-7■■□□□ 13.3
YBX3P16989 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.27□□□□□ -1.572e-7■■□□□ 13.3
YBX3P16989 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.065e-7■■□□□ 13.3
YBX3P16989 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC15.27■□□□□ 0.035e-7■■□□□ 13.3
YBX3P16989 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.75□□□□□ -0.055e-7■■□□□ 13.3
YBX3P16989 CNN2-207ENST00000565096 2109 ntTSL 2 BASIC14.71□□□□□ -0.055e-7■■□□□ 13.3
YBX3P16989 SIMC1-208ENST00000495423 913 ntTSL 232.36■■■□□ 2.775e-6■■□□□ 13.3
YBX3P16989 SIMC1-206ENST00000467472 364 ntTSL 532.36■■■□□ 2.775e-6■■□□□ 13.3
YBX3P16989 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC27.7■■■□□ 2.025e-6■■□□□ 13.3
YBX3P16989 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.53■■□□□ 1.525e-6■■□□□ 13.3
YBX3P16989 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.875e-6■■□□□ 13.3
YBX3P16989 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.035e-6■■□□□ 13.3
YBX3P16989 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19■□□□□ 0.634e-13■■□□□ 13.3
YBX3P16989 PSMF1-202ENST00000333082 3686 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.754e-13■■□□□ 13.3
YBX3P16989 PSMF1-203ENST00000335877 4290 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.814e-13■■□□□ 13.3
YBX3P16989 PPP2R2A-223ENST00000524169 784 ntTSL 318.24■□□□□ 0.512e-7■■□□□ 13.3
YBX3P16989 EIF2S1-205ENST00000556724 527 ntTSL 211.39□□□□□ -0.591e-7■■□□□ 13.3
YBX3P16989 PPP2R2A-202ENST00000380737 3940 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.932e-7■■□□□ 13.3
YBX3P16989 PPP2R2A-208ENST00000518890 1237 ntTSL 28.81□□□□□ -12e-7■■□□□ 13.3
YBX3P16989 PPP2R2A-205ENST00000518215 1163 ntTSL 38.42□□□□□ -1.062e-7■■□□□ 13.3
YBX3P16989 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC6.39□□□□□ -1.392e-7■■□□□ 13.3
YBX3P16989 IPO11-206ENST00000502862 655 ntTSL 35.92□□□□□ -1.469e-7■■□□□ 13.3
YBX3P16989 PPP2R2A-203ENST00000517754 2357 ntTSL 24.06□□□□□ -1.762e-7■■□□□ 13.3
YBX3P16989 PICALM-223ENST00000534412 811 ntTSL 58.63□□□□□ -1.034e-29■■□□□ 13.3
YBX3P16989 ACTR1A-206ENST00000494549 520 ntTSL 211.08□□□□□ -0.644e-7■■□□□ 13.3
YBX3P16989 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC23.52■■□□□ 1.365e-8■■□□□ 13.3
YBX3P16989 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC26.09■■□□□ 1.774e-7■■□□□ 13.3
YBX3P16989 XRN1-206ENST00000467077 674 ntTSL 39.7□□□□□ -0.869e-7■■□□□ 13.3
YBX3P16989 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.559e-7■■□□□ 13.3
YBX3P16989 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.829e-7■■□□□ 13.3
YBX3P16989 XRN1-214ENST00000498077 5600 ntTSL 51.69□□□□□ -2.149e-7■■□□□ 13.3
YBX3P16989 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.121e-7■■□□□ 13.3
YBX3P16989 NINJ1-202ENST00000461162 861 ntTSL 217.66■□□□□ 0.421e-7■■□□□ 13.3
YBX3P16989 NINJ1-204ENST00000489274 2026 ntTSL 215.96■□□□□ 0.151e-7■■□□□ 13.3
YBX3P16989 NINJ1-203ENST00000470314 834 ntTSL 314.92□□□□□ -0.021e-7■■□□□ 13.3
YBX3P16989 TBC1D7-213ENST00000452989 938 ntTSL 525.11■■□□□ 1.612e-6■■□□□ 13.3
YBX3P16989 TBC1D7-209ENST00000422136 972 ntTSL 325.11■■□□□ 1.612e-6■■□□□ 13.3
YBX3P16989 TBC1D7-211ENST00000446018 762 ntTSL 525.11■■□□□ 1.612e-6■■□□□ 13.3
YBX3P16989 TBC1D7-212ENST00000450347 958 ntTSL 325.11■■□□□ 1.612e-6■■□□□ 13.3
YBX3P16989 TBC1D7-220ENST00000607532 1877 ntTSL 321.68■■□□□ 1.062e-6■■□□□ 13.3
YBX3P16989 TBC1D7-221ENST00000607658 1649 ntTSL 3 BASIC14.19□□□□□ -0.142e-6■■□□□ 13.3
YBX3P16989 TBC1D7-207ENST00000420456 790 ntTSL 56.74□□□□□ -1.332e-6■■□□□ 13.3
YBX3P16989 DYM-206ENST00000577836 552 ntTSL 529.71■■■□□ 2.352e-7■■□□□ 13.3
YBX3P16989 DYM-213ENST00000582095 590 ntTSL 528.13■■■□□ 2.092e-7■■□□□ 13.3
YBX3P16989 MAEA-212ENST00000509531 1001 ntTSL 1 (best)25.58■■□□□ 1.692e-7■■□□□ 13.3
Retrieved 100 of 29,075 protein–RNA pairs in 229.1 ms