RNA–Protein interactions for RNA: ENST00000467077.1

XRN1-206, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 674 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-206ENST00000467077 AEBP2Q6ZN18 517 aaPredicted RBP33.87■■■■□ 3.01
XRN1-206ENST00000467077 CHIC1Q5VXU3 224 aa31.94■■■□□ 2.7
XRN1-206ENST00000467077 SENP3Q9H4L4 574 aaPredicted RBP29.11■■■□□ 2.25
XRN1-206ENST00000467077 PHF23Q9BUL5 403 aaPredicted RBP28.61■■■□□ 2.17
XRN1-206ENST00000467077 FOXD1Q16676 465 aa27.07■■□□□ 1.92
XRN1-206ENST00000467077 MSH5O43196 834 aa25.59■■□□□ 1.69
XRN1-206ENST00000467077 PLPPR3Q6T4P5 718 aa25.44■■□□□ 1.66
XRN1-206ENST00000467077 POTEDQ86YR6 584 aa25.44■■□□□ 1.66
XRN1-206ENST00000467077 PIAS4Q8N2W9 510 aaPredicted RBP25.32■■□□□ 1.64
XRN1-206ENST00000467077 PPP6R1Q9UPN7 881 aa24.98■■□□□ 1.59
XRN1-206ENST00000467077 ADRA2BP18089 450 aa24.94■■□□□ 1.58
XRN1-206ENST00000467077 SCAF1Q9H7N4 1312 aaKnown RBP22.99■■□□□ 1.27
XRN1-206ENST00000467077 DMRT2Q9Y5R5 561 aa22.98■■□□□ 1.27
XRN1-206ENST00000467077 MAPK8IP2Q13387 824 aaPredicted RBP22.97■■□□□ 1.27
XRN1-206ENST00000467077 PPP4R3CPQ6ZMV5 832 aa22.21■■□□□ 1.15
XRN1-206ENST00000467077 DCAF8L1A6NGE4 600 aa22.18■■□□□ 1.14
XRN1-206ENST00000467077 CACNB1Q02641 598 aaPredicted RBP22.16■■□□□ 1.14
XRN1-206ENST00000467077 HOXD11P31277 338 aaPredicted RBP21.98■■□□□ 1.11
XRN1-206ENST00000467077 CNKSR2Q8WXI2 1034 aa21.9■■□□□ 1.1
XRN1-206ENST00000467077 RNF216Q9NWF9 866 aaPredicted RBP21.77■■□□□ 1.08
XRN1-206ENST00000467077 RNF39Q9H2S5 420 aa21.71■■□□□ 1.07
XRN1-206ENST00000467077 C1QBPQ07021 282 aaKnown RBP21.44■■□□□ 1.02
XRN1-206ENST00000467077 NCBP3Q53F19 620 aaKnown RBP21.36■■□□□ 1.01
XRN1-206ENST00000467077 DNAJC5BQ9UF47 199 aa21.3■■□□□ 1
XRN1-206ENST00000467077 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.05■□□□□ 0.963e-7■■■■□ 23.3
XRN1-206ENST00000467077 NPM3O75607 178 aaKnown RBP20.93■□□□□ 0.94
XRN1-206ENST00000467077 U3KPZ7 1027 aaPredicted RBP20.47■□□□□ 0.87
XRN1-206ENST00000467077 CAPN15O75808 1086 aa20.37■□□□□ 0.85
XRN1-206ENST00000467077 SPINK5Q9NQ38 1064 aaPredicted RBP20.27■□□□□ 0.84
XRN1-206ENST00000467077 KCNA4P22459 653 aa20.22■□□□□ 0.83
XRN1-206ENST00000467077 DSG3P32926 999 aa20.22■□□□□ 0.83
XRN1-206ENST00000467077 APLP2Q06481 763 aa20.08■□□□□ 0.81
XRN1-206ENST00000467077 SLC4A2P04920 1241 aa20.02■□□□□ 0.8
XRN1-206ENST00000467077 TRHP20396 242 aaPredicted RBP19.94■□□□□ 0.78
XRN1-206ENST00000467077 ZNF219Q9P2Y4 722 aaPredicted RBP19.93■□□□□ 0.78
XRN1-206ENST00000467077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.92■□□□□ 0.78
XRN1-206ENST00000467077 HNRNPUL2Q1KMD3 747 aaKnown RBP19.92■□□□□ 0.78
XRN1-206ENST00000467077 POTEHQ6S545 545 aa19.91■□□□□ 0.78
XRN1-206ENST00000467077 ABCB7O75027 752 aa19.82■□□□□ 0.76
XRN1-206ENST00000467077 SAMD1Q6SPF0 538 aaPredicted RBP19.76■□□□□ 0.75
XRN1-206ENST00000467077 MYCNP04198 464 aaPredicted RBP19.45■□□□□ 0.7
XRN1-206ENST00000467077 RBM42Q9BTD8 480 aaKnown RBP19.44■□□□□ 0.7
XRN1-206ENST00000467077 POLA2Q14181 598 aa19.28■□□□□ 0.68
XRN1-206ENST00000467077 SLC4A1APQ9BWU0 796 aaKnown RBP19.1■□□□□ 0.65
XRN1-206ENST00000467077 CHRDL2Q6WN34 429 aa19.07■□□□□ 0.64
XRN1-206ENST00000467077 FOXD4L1Q9NU39 408 aa19.05■□□□□ 0.64
XRN1-206ENST00000467077 ZBTB12Q9Y330 459 aaPredicted RBP18.99■□□□□ 0.63
XRN1-206ENST00000467077 ATF5Q9Y2D1 282 aaPredicted RBP18.88■□□□□ 0.61
XRN1-206ENST00000467077 AKT1S1Q96B36 256 aa18.85■□□□□ 0.61
XRN1-206ENST00000467077 OSCARQ8IYS5 282 aa18.71■□□□□ 0.59
XRN1-206ENST00000467077 REM2Q8IYK8 340 aaPredicted RBP18.63■□□□□ 0.57
XRN1-206ENST00000467077 ZBTB22O15209 634 aa18.52■□□□□ 0.56
XRN1-206ENST00000467077 SP7Q8TDD2 431 aaPredicted RBP18.52■□□□□ 0.56
XRN1-206ENST00000467077 PIP4P2Q8N4L2 257 aa18.5■□□□□ 0.55
XRN1-206ENST00000467077 ATXN8OSP0DMR3 200 aa18.48■□□□□ 0.55
XRN1-206ENST00000467077 PITPNM1O00562 1244 aa18.46■□□□□ 0.55
XRN1-206ENST00000467077 FBLN2P98095 1184 aa18.38■□□□□ 0.53
XRN1-206ENST00000467077 HAX1O00165 279 aa18.33■□□□□ 0.52
XRN1-206ENST00000467077 FXR2P51116 673 aaKnown RBP eCLIP18.33■□□□□ 0.52
XRN1-206ENST00000467077 SPDYE2BA6NHP3 402 aa18.3■□□□□ 0.52
XRN1-206ENST00000467077 SPDYE6P0CI01 402 aa18.3■□□□□ 0.52
XRN1-206ENST00000467077 SPDYE2Q495Y8 402 aa18.3■□□□□ 0.52
XRN1-206ENST00000467077 SPDYE1Q8NFV5 336 aaPredicted RBP18.09■□□□□ 0.49
XRN1-206ENST00000467077 CLEC11AQ9Y240 323 aa18.09■□□□□ 0.49
XRN1-206ENST00000467077 ZNF692Q9BU19 519 aaPredicted RBP18.03■□□□□ 0.48
XRN1-206ENST00000467077 PRKAR2AP13861 404 aaKnown RBP18.01■□□□□ 0.47
XRN1-206ENST00000467077 MKRN4PQ13434 485 aaPredicted RBP18.01■□□□□ 0.47
XRN1-206ENST00000467077 SSUH2Q9Y2M2 353 aa17.96■□□□□ 0.47
XRN1-206ENST00000467077 EVX2Q03828 476 aa17.91■□□□□ 0.46
XRN1-206ENST00000467077 C19orf67A6NJJ6 358 aa17.75■□□□□ 0.43
XRN1-206ENST00000467077 PABPN1Q86U42 306 aaKnown RBP eCLIP17.74■□□□□ 0.43
XRN1-206ENST00000467077 PRR29P0C7W0 189 aa17.72■□□□□ 0.43
XRN1-206ENST00000467077 CHADLQ6NUI6 762 aa17.7■□□□□ 0.42
XRN1-206ENST00000467077 GABBR2O75899 941 aa17.58■□□□□ 0.4
XRN1-206ENST00000467077 CD44P16070 742 aaKnown RBP17.44■□□□□ 0.38
XRN1-206ENST00000467077 FARP1Q9Y4F1 1045 aaPredicted RBP17.41■□□□□ 0.38
XRN1-206ENST00000467077 CSRNP3Q8WYN3 585 aa17.39■□□□□ 0.37
XRN1-206ENST00000467077 LHX8Q68G74 356 aa17.36■□□□□ 0.37
XRN1-206ENST00000467077 CLCN6P51797 869 aa17.29■□□□□ 0.36
XRN1-206ENST00000467077 STAG3Q9UJ98 1225 aa17.25■□□□□ 0.35
XRN1-206ENST00000467077 DCBLD2Q96PD2 775 aa17.16■□□□□ 0.34
XRN1-206ENST00000467077 ZRANB1Q9UGI0 708 aa17.14■□□□□ 0.33
XRN1-206ENST00000467077 POTEIP0CG38 1075 aa17.13■□□□□ 0.33
XRN1-206ENST00000467077 ZNF579Q8NAF0 562 aaKnown RBP17.12■□□□□ 0.33
XRN1-206ENST00000467077 EHMT2Q96KQ7 1210 aa17.12■□□□□ 0.33
XRN1-206ENST00000467077 CREBZFQ9NS37 354 aa17.11■□□□□ 0.33
XRN1-206ENST00000467077 SPDYE4A6NLX3 237 aa17.1■□□□□ 0.33
XRN1-206ENST00000467077 PAK3O75914 559 aaPredicted RBP17.04■□□□□ 0.32
XRN1-206ENST00000467077 NPM1P06748 294 aaKnown RBP eCLIP16.92■□□□□ 0.3
XRN1-206ENST00000467077 GALR2O43603 387 aaPredicted RBP16.91■□□□□ 0.3
XRN1-206ENST00000467077 PHF12Q96QT6 1004 aa16.82■□□□□ 0.28
XRN1-206ENST00000467077 MNX1P50219 401 aaPredicted RBP16.72■□□□□ 0.27
XRN1-206ENST00000467077 OTUD5Q96G74 571 aa16.6■□□□□ 0.25
XRN1-206ENST00000467077 MS4A3Q96HJ5 214 aa16.6■□□□□ 0.25
XRN1-206ENST00000467077 PLSCR2Q9NRY7 297 aa16.59■□□□□ 0.25
XRN1-206ENST00000467077 POTEB2H3BUK9 544 aa16.56■□□□□ 0.24
XRN1-206ENST00000467077 TSPYL2Q9H2G4 693 aaPredicted RBP16.56■□□□□ 0.24
XRN1-206ENST00000467077 PELP1Q8IZL8 1130 aaKnown RBP16.54■□□□□ 0.24
XRN1-206ENST00000467077 PROM2Q8N271 834 aa16.54■□□□□ 0.24
XRN1-206ENST00000467077 PLEKHG5O94827 1062 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 277.5 ms