RNA–Protein interactions for RNA: ENST00000478050.1

SF3B6-202, Transcript of splicing factor 3b subunit 6, humanhuman

TSL 2

Gene SF3B6, Length 720 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-202ENST00000478050 AEBP2Q6ZN18 517 aaPredicted RBP20.67■□□□□ 0.9
SF3B6-202ENST00000478050 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
SF3B6-202ENST00000478050 SENP3Q9H4L4 574 aaPredicted RBP17.75■□□□□ 0.43
SF3B6-202ENST00000478050 PHF23Q9BUL5 403 aaPredicted RBP17.48■□□□□ 0.39
SF3B6-202ENST00000478050 POTEDQ86YR6 584 aa16.88■□□□□ 0.29
SF3B6-202ENST00000478050 FOXD1Q16676 465 aa16.54■□□□□ 0.24
SF3B6-202ENST00000478050 MSH5O43196 834 aa15.63■□□□□ 0.09
SF3B6-202ENST00000478050 PIAS4Q8N2W9 510 aaPredicted RBP15.44■□□□□ 0.06
SF3B6-202ENST00000478050 PLPPR3Q6T4P5 718 aa15.42■□□□□ 0.06
SF3B6-202ENST00000478050 PPP6R1Q9UPN7 881 aa15.23■□□□□ 0.03
SF3B6-202ENST00000478050 ADRA2BP18089 450 aa15.21■□□□□ 0.03
SF3B6-202ENST00000478050 MAPK8IP2Q13387 824 aaPredicted RBP14.05□□□□□ -0.16
SF3B6-202ENST00000478050 SCAF1Q9H7N4 1312 aaKnown RBP14□□□□□ -0.17
SF3B6-202ENST00000478050 DMRT2Q9Y5R5 561 aa14□□□□□ -0.17
SF3B6-202ENST00000478050 CACNB1Q02641 598 aaPredicted RBP13.86□□□□□ -0.19
SF3B6-202ENST00000478050 DCAF8L1A6NGE4 600 aa13.56□□□□□ -0.24
SF3B6-202ENST00000478050 PPP4R3CPQ6ZMV5 832 aa13.47□□□□□ -0.25
SF3B6-202ENST00000478050 HOXD11P31277 338 aaPredicted RBP13.36□□□□□ -0.27
SF3B6-202ENST00000478050 CNKSR2Q8WXI2 1034 aa13.29□□□□□ -0.28
SF3B6-202ENST00000478050 RNF39Q9H2S5 420 aa13.27□□□□□ -0.29
SF3B6-202ENST00000478050 RNF216Q9NWF9 866 aaPredicted RBP13.22□□□□□ -0.29
SF3B6-202ENST00000478050 C1QBPQ07021 282 aaKnown RBP13.09□□□□□ -0.31
SF3B6-202ENST00000478050 POTEHQ6S545 545 aa13.02□□□□□ -0.33
SF3B6-202ENST00000478050 DNAJC5BQ9UF47 199 aa12.95□□□□□ -0.34
SF3B6-202ENST00000478050 NCBP3Q53F19 620 aaKnown RBP12.94□□□□□ -0.34
SF3B6-202ENST00000478050 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.84□□□□□ -0.352e-12■■□□□ 11.8
SF3B6-202ENST00000478050 NPM3O75607 178 aaKnown RBP12.65□□□□□ -0.38
SF3B6-202ENST00000478050 U3KPZ7 1027 aaPredicted RBP12.44□□□□□ -0.42
SF3B6-202ENST00000478050 CAPN15O75808 1086 aa12.43□□□□□ -0.42
SF3B6-202ENST00000478050 SPINK5Q9NQ38 1064 aaPredicted RBP12.36□□□□□ -0.43
SF3B6-202ENST00000478050 DSG3P32926 999 aa12.34□□□□□ -0.43
SF3B6-202ENST00000478050 KCNA4P22459 653 aa12.18□□□□□ -0.46
SF3B6-202ENST00000478050 APLP2Q06481 763 aa12.18□□□□□ -0.46
SF3B6-202ENST00000478050 TRHP20396 242 aaPredicted RBP12.17□□□□□ -0.46
SF3B6-202ENST00000478050 SLC4A2P04920 1241 aa12.13□□□□□ -0.47
SF3B6-202ENST00000478050 ZNF219Q9P2Y4 722 aaPredicted RBP12.11□□□□□ -0.47
SF3B6-202ENST00000478050 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.08□□□□□ -0.48
SF3B6-202ENST00000478050 ABCB7O75027 752 aa12.08□□□□□ -0.48
SF3B6-202ENST00000478050 HNRNPUL2Q1KMD3 747 aaKnown RBP12.08□□□□□ -0.48
SF3B6-202ENST00000478050 SAMD1Q6SPF0 538 aaPredicted RBP11.98□□□□□ -0.49
SF3B6-202ENST00000478050 RBM42Q9BTD8 480 aaKnown RBP11.85□□□□□ -0.51
SF3B6-202ENST00000478050 MYCNP04198 464 aaPredicted RBP11.75□□□□□ -0.53
SF3B6-202ENST00000478050 POLA2Q14181 598 aa11.74□□□□□ -0.53
SF3B6-202ENST00000478050 CHRDL2Q6WN34 429 aa11.67□□□□□ -0.54
SF3B6-202ENST00000478050 SP7Q8TDD2 431 aaPredicted RBP11.67□□□□□ -0.54
SF3B6-202ENST00000478050 ZBTB12Q9Y330 459 aaPredicted RBP11.5□□□□□ -0.57
SF3B6-202ENST00000478050 AKT1S1Q96B36 256 aa11.49□□□□□ -0.57
SF3B6-202ENST00000478050 SLC4A1APQ9BWU0 796 aaKnown RBP11.49□□□□□ -0.57
SF3B6-202ENST00000478050 FOXD4L1Q9NU39 408 aa11.47□□□□□ -0.57
SF3B6-202ENST00000478050 ATF5Q9Y2D1 282 aaPredicted RBP11.44□□□□□ -0.58
SF3B6-202ENST00000478050 REM2Q8IYK8 340 aaPredicted RBP11.38□□□□□ -0.59
SF3B6-202ENST00000478050 OSCARQ8IYS5 282 aa11.35□□□□□ -0.59
SF3B6-202ENST00000478050 PIP4P2Q8N4L2 257 aa11.31□□□□□ -0.6
SF3B6-202ENST00000478050 HAX1O00165 279 aa11.26□□□□□ -0.61
SF3B6-202ENST00000478050 PITPNM1O00562 1244 aa11.24□□□□□ -0.61
SF3B6-202ENST00000478050 PLSCR2Q9NRY7 297 aa11.24□□□□□ -0.61
SF3B6-202ENST00000478050 FXR2P51116 673 aaKnown RBP eCLIP11.18□□□□□ -0.62
SF3B6-202ENST00000478050 ATXN8OSP0DMR3 200 aa11.15□□□□□ -0.62
SF3B6-202ENST00000478050 ZBTB22O15209 634 aa11.13□□□□□ -0.63
SF3B6-202ENST00000478050 FBLN2P98095 1184 aa11.13□□□□□ -0.63
SF3B6-202ENST00000478050 SPDYE2BA6NHP3 402 aa11.11□□□□□ -0.63
SF3B6-202ENST00000478050 SPDYE6P0CI01 402 aa11.11□□□□□ -0.63
SF3B6-202ENST00000478050 SPDYE2Q495Y8 402 aa11.11□□□□□ -0.63
SF3B6-202ENST00000478050 CLEC11AQ9Y240 323 aa11.02□□□□□ -0.65
SF3B6-202ENST00000478050 SPDYE1Q8NFV5 336 aaPredicted RBP11□□□□□ -0.65
SF3B6-202ENST00000478050 EVX2Q03828 476 aa10.99□□□□□ -0.65
SF3B6-202ENST00000478050 PRKAR2AP13861 404 aaKnown RBP10.98□□□□□ -0.65
SF3B6-202ENST00000478050 ZNF692Q9BU19 519 aaPredicted RBP10.96□□□□□ -0.65
SF3B6-202ENST00000478050 LHX8Q68G74 356 aa10.93□□□□□ -0.66
SF3B6-202ENST00000478050 MKRN4PQ13434 485 aaPredicted RBP10.89□□□□□ -0.67
SF3B6-202ENST00000478050 SSUH2Q9Y2M2 353 aa10.87□□□□□ -0.67
SF3B6-202ENST00000478050 C19orf67A6NJJ6 358 aa10.84□□□□□ -0.67
SF3B6-202ENST00000478050 PRR29P0C7W0 189 aa10.8□□□□□ -0.68
SF3B6-202ENST00000478050 CHADLQ6NUI6 762 aa10.79□□□□□ -0.68
SF3B6-202ENST00000478050 GABBR2O75899 941 aa10.77□□□□□ -0.69
SF3B6-202ENST00000478050 PABPN1Q86U42 306 aaKnown RBP eCLIP10.77□□□□□ -0.69
SF3B6-202ENST00000478050 CD44P16070 742 aaKnown RBP10.62□□□□□ -0.71
SF3B6-202ENST00000478050 FARP1Q9Y4F1 1045 aaPredicted RBP10.6□□□□□ -0.71
SF3B6-202ENST00000478050 CLCN6P51797 869 aa10.54□□□□□ -0.72
SF3B6-202ENST00000478050 DCBLD2Q96PD2 775 aa10.5□□□□□ -0.73
SF3B6-202ENST00000478050 POTEIP0CG38 1075 aa10.48□□□□□ -0.73
SF3B6-202ENST00000478050 STAG3Q9UJ98 1225 aa10.45□□□□□ -0.74
SF3B6-202ENST00000478050 ZRANB1Q9UGI0 708 aa10.44□□□□□ -0.74
SF3B6-202ENST00000478050 CSRNP3Q8WYN3 585 aa10.42□□□□□ -0.74
SF3B6-202ENST00000478050 ZNF579Q8NAF0 562 aaKnown RBP10.41□□□□□ -0.74
SF3B6-202ENST00000478050 NISCHQ9Y2I1 1504 aa10.39□□□□□ -0.75
SF3B6-202ENST00000478050 CREBZFQ9NS37 354 aa10.38□□□□□ -0.75
SF3B6-202ENST00000478050 POTEMA6NI47 508 aa10.37□□□□□ -0.75
SF3B6-202ENST00000478050 PAK3O75914 559 aaPredicted RBP10.35□□□□□ -0.75
SF3B6-202ENST00000478050 SPDYE4A6NLX3 237 aa10.32□□□□□ -0.76
SF3B6-202ENST00000478050 GALR2O43603 387 aaPredicted RBP10.3□□□□□ -0.76
SF3B6-202ENST00000478050 POTEGQ6S5H5 508 aa10.29□□□□□ -0.76
SF3B6-202ENST00000478050 NPM1P06748 294 aaKnown RBP eCLIP10.27□□□□□ -0.77
SF3B6-202ENST00000478050 PHF12Q96QT6 1004 aa10.25□□□□□ -0.77
SF3B6-202ENST00000478050 PCDH10Q9P2E7 1040 aa10.25□□□□□ -0.77
SF3B6-202ENST00000478050 EHMT2Q96KQ7 1210 aa10.21□□□□□ -0.77
SF3B6-202ENST00000478050 OTUD5Q96G74 571 aa10.18□□□□□ -0.78
SF3B6-202ENST00000478050 POTEB2H3BUK9 544 aa10.13□□□□□ -0.79
SF3B6-202ENST00000478050 MNX1P50219 401 aaPredicted RBP10.13□□□□□ -0.79
SF3B6-202ENST00000478050 PELP1Q8IZL8 1130 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms