RNA–Protein interactions for RNA: ENST00000498077.6

XRN1-214, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 5,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-214ENST00000498077 CHIC1Q5VXU3 224 aa4.46□□□□□ -1.7
XRN1-214ENST00000498077 AEBP2Q6ZN18 517 aaPredicted RBP4.25□□□□□ -1.73
XRN1-214ENST00000498077 POTEDQ86YR6 584 aa4.21□□□□□ -1.74
XRN1-214ENST00000498077 SENP3Q9H4L4 574 aaPredicted RBP4.02□□□□□ -1.77
XRN1-214ENST00000498077 PHF23Q9BUL5 403 aaPredicted RBP3.81□□□□□ -1.8
XRN1-214ENST00000498077 DNAJC5Q9H3Z4 198 aa3.73□□□□□ -1.81
XRN1-214ENST00000498077 PLPPR3Q6T4P5 718 aa3.61□□□□□ -1.83
XRN1-214ENST00000498077 MSH5O43196 834 aa3.58□□□□□ -1.84
XRN1-214ENST00000498077 FOXD1Q16676 465 aa3.48□□□□□ -1.85
XRN1-214ENST00000498077 SCAF1Q9H7N4 1312 aaKnown RBP3.42□□□□□ -1.86
XRN1-214ENST00000498077 PIAS4Q8N2W9 510 aaPredicted RBP3.42□□□□□ -1.86
XRN1-214ENST00000498077 NCBP3Q53F19 620 aaKnown RBP3.27□□□□□ -1.89
XRN1-214ENST00000498077 ADRA2BP18089 450 aa3.25□□□□□ -1.89
XRN1-214ENST00000498077 ILDR1Q86SU0 546 aaPredicted RBP3.24□□□□□ -1.89
XRN1-214ENST00000498077 APLP2Q06481 763 aa3.21□□□□□ -1.9
XRN1-214ENST00000498077 SOCS7O14512 581 aa3.18□□□□□ -1.9
XRN1-214ENST00000498077 DNAJC5BQ9UF47 199 aa3.17□□□□□ -1.9
XRN1-214ENST00000498077 CUX2O14529 1486 aa3.16□□□□□ -1.9
XRN1-214ENST00000498077 PPP6R1Q9UPN7 881 aa3.12□□□□□ -1.91
XRN1-214ENST00000498077 CNKSR2Q8WXI2 1034 aa3.11□□□□□ -1.91
XRN1-214ENST00000498077 DMRT2Q9Y5R5 561 aa3.1□□□□□ -1.91
XRN1-214ENST00000498077 DCAF8L1A6NGE4 600 aa3.1□□□□□ -1.91
XRN1-214ENST00000498077 LMTK3Q96Q04 1460 aa3.1□□□□□ -1.91
XRN1-214ENST00000498077 PPP4R3CPQ6ZMV5 832 aa3.09□□□□□ -1.91
XRN1-214ENST00000498077 TRIM41Q8WV44 630 aa3.09□□□□□ -1.91
XRN1-214ENST00000498077 ERCC6L2Q5T890 1561 aa3.05□□□□□ -1.92
XRN1-214ENST00000498077 RNF216Q9NWF9 866 aaPredicted RBP3.04□□□□□ -1.92
XRN1-214ENST00000498077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.04□□□□□ -1.92
XRN1-214ENST00000498077 HNRNPUL2Q1KMD3 747 aaKnown RBP3.04□□□□□ -1.92
XRN1-214ENST00000498077 FBXO41Q8TF61 875 aa3.02□□□□□ -1.93
XRN1-214ENST00000498077 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.01□□□□□ -1.932e-6■■■□□ 15.9
XRN1-214ENST00000498077 CACNB1Q02641 598 aaPredicted RBP3.01□□□□□ -1.93
XRN1-214ENST00000498077 PCDH10Q9P2E7 1040 aa2.98□□□□□ -1.93
XRN1-214ENST00000498077 HOXD11P31277 338 aaPredicted RBP2.97□□□□□ -1.93
XRN1-214ENST00000498077 KRTAP17-1Q9BYP8 105 aa2.97□□□□□ -1.93
XRN1-214ENST00000498077 C1QBPQ07021 282 aaKnown RBP2.96□□□□□ -1.93
XRN1-214ENST00000498077 POTEHQ6S545 545 aa2.94□□□□□ -1.94
XRN1-214ENST00000498077 SAMD1Q6SPF0 538 aaPredicted RBP2.93□□□□□ -1.94
XRN1-214ENST00000498077 ABCC9O60706 1549 aa2.91□□□□□ -1.94
XRN1-214ENST00000498077 ZBTB12Q9Y330 459 aaPredicted RBP2.91□□□□□ -1.94
XRN1-214ENST00000498077 MAPK8IP2Q13387 824 aaPredicted RBP2.9□□□□□ -1.94
XRN1-214ENST00000498077 IFFO2Q5TF58 517 aa2.89□□□□□ -1.95
XRN1-214ENST00000498077 SHROOM4Q9ULL8 1493 aa2.89□□□□□ -1.95
XRN1-214ENST00000498077 ZNF219Q9P2Y4 722 aaPredicted RBP2.88□□□□□ -1.95
XRN1-214ENST00000498077 SPATA31D1Q6ZQQ2 1576 aa2.88□□□□□ -1.95
XRN1-214ENST00000498077 ATP1B4Q9UN42 357 aaPredicted RBP2.87□□□□□ -1.95
XRN1-214ENST00000498077 PABPN1Q86U42 306 aaKnown RBP eCLIP2.87□□□□□ -1.95
XRN1-214ENST00000498077 CAPN15O75808 1086 aa2.86□□□□□ -1.95
XRN1-214ENST00000498077 DISP3Q9P2K9 1392 aa2.85□□□□□ -1.95
XRN1-214ENST00000498077 DCAF8L2P0C7V8 631 aa2.85□□□□□ -1.95
XRN1-214ENST00000498077 RNF39Q9H2S5 420 aa2.84□□□□□ -1.96
XRN1-214ENST00000498077 CECR2Q9BXF3 1484 aa2.83□□□□□ -1.96
XRN1-214ENST00000498077 RBM42Q9BTD8 480 aaKnown RBP2.83□□□□□ -1.96
XRN1-214ENST00000498077 NPM3O75607 178 aaKnown RBP2.83□□□□□ -1.96
XRN1-214ENST00000498077 MYCNP04198 464 aaPredicted RBP2.82□□□□□ -1.96
XRN1-214ENST00000498077 FBLN2P98095 1184 aa2.82□□□□□ -1.96
XRN1-214ENST00000498077 NISCHQ9Y2I1 1504 aa2.82□□□□□ -1.96
XRN1-214ENST00000498077 SLC4A1APQ9BWU0 796 aaKnown RBP2.81□□□□□ -1.96
XRN1-214ENST00000498077 IGSF5Q9NSI5 407 aa2.8□□□□□ -1.96
XRN1-214ENST00000498077 ATXN8OSP0DMR3 200 aa2.79□□□□□ -1.96
XRN1-214ENST00000498077 RB1CC1Q8TDY2 1594 aa2.79□□□□□ -1.96
XRN1-214ENST00000498077 SLC34A2O95436 690 aa2.79□□□□□ -1.96
XRN1-214ENST00000498077 ILDR2Q71H61 639 aa2.79□□□□□ -1.96
XRN1-214ENST00000498077 FOXD4L1Q9NU39 408 aa2.77□□□□□ -1.97
XRN1-214ENST00000498077 TRHP20396 242 aaPredicted RBP2.76□□□□□ -1.97
XRN1-214ENST00000498077 BICRAQ9NZM4 1560 aa2.75□□□□□ -1.97
XRN1-214ENST00000498077 KCNA4P22459 653 aa2.74□□□□□ -1.97
XRN1-214ENST00000498077 PLEKHG5O94827 1062 aa2.74□□□□□ -1.97
XRN1-214ENST00000498077 RIMBP3CA6NJZ7 1639 aa2.73□□□□□ -1.97
XRN1-214ENST00000498077 RIMBP3BA6NNM3 1639 aa2.73□□□□□ -1.97
XRN1-214ENST00000498077 RIMBP3Q9UFD9 1639 aa2.73□□□□□ -1.97
XRN1-214ENST00000498077 CC2D2AQ9P2K1 1620 aa2.72□□□□□ -1.97
XRN1-214ENST00000498077 KDM6BO15054 1643 aa2.71□□□□□ -1.97
XRN1-214ENST00000498077 ERCC6Q03468 1493 aa2.71□□□□□ -1.98
XRN1-214ENST00000498077 HECW2Q9P2P5 1572 aa2.71□□□□□ -1.98
XRN1-214ENST00000498077 U3KPZ7 1027 aaPredicted RBP2.7□□□□□ -1.98
XRN1-214ENST00000498077 STAG3Q9UJ98 1225 aa2.7□□□□□ -1.98
XRN1-214ENST00000498077 OSCARQ8IYS5 282 aa2.69□□□□□ -1.98
XRN1-214ENST00000498077 BAZ1AQ9NRL2 1556 aaPredicted RBP2.69□□□□□ -1.98
XRN1-214ENST00000498077 AKT1S1Q96B36 256 aa2.68□□□□□ -1.98
XRN1-214ENST00000498077 MYT1LQ9UL68 1186 aa2.66□□□□□ -1.98
XRN1-214ENST00000498077 CLCN6P51797 869 aa2.66□□□□□ -1.98
XRN1-214ENST00000498077 CCDC180Q9P1Z9 1646 aa2.66□□□□□ -1.98
XRN1-214ENST00000498077 IQSEC2Q5JU85 1478 aa2.66□□□□□ -1.98
XRN1-214ENST00000498077 PAK3O75914 559 aaPredicted RBP2.65□□□□□ -1.98
XRN1-214ENST00000498077 SPDYE1Q8NFV5 336 aaPredicted RBP2.65□□□□□ -1.98
XRN1-214ENST00000498077 SYNJ2O15056 1496 aa2.65□□□□□ -1.99
XRN1-214ENST00000498077 DSG3P32926 999 aa2.65□□□□□ -1.99
XRN1-214ENST00000498077 ABCB7O75027 752 aa2.64□□□□□ -1.99
XRN1-214ENST00000498077 SPDYE2BA6NHP3 402 aa2.64□□□□□ -1.99
XRN1-214ENST00000498077 SPDYE6P0CI01 402 aa2.64□□□□□ -1.99
XRN1-214ENST00000498077 SPDYE2Q495Y8 402 aa2.64□□□□□ -1.99
XRN1-214ENST00000498077 ARHGEF11O15085 1522 aa2.64□□□□□ -1.99
XRN1-214ENST00000498077 NACADO15069 1562 aa2.63□□□□□ -1.99
XRN1-214ENST00000498077 POLA2Q14181 598 aa2.63□□□□□ -1.99
XRN1-214ENST00000498077 NPM1P06748 294 aaKnown RBP eCLIP2.63□□□□□ -1.99
XRN1-214ENST00000498077 ZBTB47Q9UFB7 747 aaPredicted RBP2.61□□□□□ -1.99
XRN1-214ENST00000498077 TOP2BQ02880 1626 aa2.61□□□□□ -1.99
XRN1-214ENST00000498077 MYT1Q01538 1121 aa2.61□□□□□ -1.99
XRN1-214ENST00000498077 THOC2Q8NI27 1593 aaKnown RBP2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms