RNA–Protein interactions for RNA: ENST00000489274.1

NINJ1-204, Transcript of ninjurin 1, humanhuman

TSL 2

Gene NINJ1, Length 2,026 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NINJ1-204ENST00000489274 NISCHQ9Y2I1 1504 aa32.08■■■□□ 2.73
NINJ1-204ENST00000489274 CCDC180Q9P1Z9 1646 aa27.73■■■□□ 2.03
NINJ1-204ENST00000489274 ZCCHC6Q5VYS8 1495 aaKnown RBP27.02■■□□□ 1.92
NINJ1-204ENST00000489274 DCAF1Q9Y4B6 1507 aa26.54■■□□□ 1.84
NINJ1-204ENST00000489274 SHROOM4Q9ULL8 1493 aa26.43■■□□□ 1.82
NINJ1-204ENST00000489274 DCAF8L2P0C7V8 631 aa26.39■■□□□ 1.82
NINJ1-204ENST00000489274 MYO15BQ96JP2 1530 aa26.09■■□□□ 1.77
NINJ1-204ENST00000489274 ABCC9O60706 1549 aa25.93■■□□□ 1.74
NINJ1-204ENST00000489274 NACADO15069 1562 aa25.79■■□□□ 1.72
NINJ1-204ENST00000489274 SUPT5HO00267 1087 aaKnown RBP25.66■■□□□ 1.7
NINJ1-204ENST00000489274 SCRIBQ14160 1630 aa25.56■■□□□ 1.68
NINJ1-204ENST00000489274 RB1CC1Q8TDY2 1594 aa25.45■■□□□ 1.67
NINJ1-204ENST00000489274 RSF1Q96T23 1441 aaPredicted RBP25.06■■□□□ 1.6
NINJ1-204ENST00000489274 CECR2Q9BXF3 1484 aa24.91■■□□□ 1.58
NINJ1-204ENST00000489274 UNC13AQ9UPW8 1703 aa24.88■■□□□ 1.57
NINJ1-204ENST00000489274 CHIC1Q5VXU3 224 aa24.8■■□□□ 1.56
NINJ1-204ENST00000489274 MROH2BQ7Z745 1585 aa24.8■■□□□ 1.56
NINJ1-204ENST00000489274 BAZ1AQ9NRL2 1556 aaPredicted RBP24.73■■□□□ 1.55
NINJ1-204ENST00000489274 BICRAQ9NZM4 1560 aa24.7■■□□□ 1.54
NINJ1-204ENST00000489274 WIZO95785 1651 aa24.58■■□□□ 1.53
NINJ1-204ENST00000489274 PABPN1Q86U42 306 aaKnown RBP eCLIP24.57■■□□□ 1.52
NINJ1-204ENST00000489274 SMARCA4P51532 1647 aa24.55■■□□□ 1.52
NINJ1-204ENST00000489274 TOP2AP11388 1531 aaKnown RBP24.36■■□□□ 1.49
NINJ1-204ENST00000489274 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
NINJ1-204ENST00000489274 CCDC88BA6NC98 1476 aa24.15■■□□□ 1.46
NINJ1-204ENST00000489274 SMARCA2P51531 1590 aa24.14■■□□□ 1.45
NINJ1-204ENST00000489274 TRIM41Q8WV44 630 aa24.11■■□□□ 1.45
NINJ1-204ENST00000489274 ATAD2BQ9ULI0 1458 aa24.09■■□□□ 1.45
NINJ1-204ENST00000489274 EIF4G1Q04637 1599 aaKnown RBP24.08■■□□□ 1.45
NINJ1-204ENST00000489274 BAZ1BQ9UIG0 1483 aaKnown RBP23.95■■□□□ 1.42
NINJ1-204ENST00000489274 LOC105371045A0A1W2PR82 267 aa23.86■■□□□ 1.41
NINJ1-204ENST00000489274 NCAPD3P42695 1498 aa23.84■■□□□ 1.41
NINJ1-204ENST00000489274 HMGXB3Q12766 1538 aa23.79■■□□□ 1.4
NINJ1-204ENST00000489274 ABCC8Q09428 1581 aa23.72■■□□□ 1.39
NINJ1-204ENST00000489274 FAM9AQ8IZU1 332 aaPredicted RBP23.66■■□□□ 1.38
NINJ1-204ENST00000489274 WRNQ14191 1432 aaPredicted RBP eCLIP23.57■■□□□ 1.36
NINJ1-204ENST00000489274 CC2D2AQ9P2K1 1620 aa23.45■■□□□ 1.34
NINJ1-204ENST00000489274 EEA1Q15075 1411 aa23.45■■□□□ 1.34
NINJ1-204ENST00000489274 SYNJ1O43426 1573 aa23.41■■□□□ 1.34
NINJ1-204ENST00000489274 CFTRP13569 1480 aa23.41■■□□□ 1.34
NINJ1-204ENST00000489274 SOGA1O94964 1423 aa23.4■■□□□ 1.34
NINJ1-204ENST00000489274 CSRNP3Q8WYN3 585 aa23.32■■□□□ 1.32
NINJ1-204ENST00000489274 TOP2BQ02880 1626 aa23.3■■□□□ 1.32
NINJ1-204ENST00000489274 RUSC2Q8N2Y8 1516 aa23.28■■□□□ 1.32
NINJ1-204ENST00000489274 EHMT2Q96KQ7 1210 aa23.28■■□□□ 1.32
NINJ1-204ENST00000489274 CADPSQ9ULU8 1353 aa23.26■■□□□ 1.31
NINJ1-204ENST00000489274 BIVM-ERCC5R4GMW8 1640 aa23.24■■□□□ 1.31
NINJ1-204ENST00000489274 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
NINJ1-204ENST00000489274 TNIKQ9UKE5 1360 aa23.16■■□□□ 1.3
NINJ1-204ENST00000489274 PCGF6Q9BYE7 350 aa23.16■■□□□ 1.3
NINJ1-204ENST00000489274 CUX1P39880 1505 aa23.16■■□□□ 1.3
NINJ1-204ENST00000489274 GOLGA3Q08378 1498 aa23.11■■□□□ 1.29
NINJ1-204ENST00000489274 TRIM26Q12899 539 aaPredicted RBP23.09■■□□□ 1.29
NINJ1-204ENST00000489274 CEP164Q9UPV0 1460 aa23.08■■□□□ 1.29
NINJ1-204ENST00000489274 KIF21BO75037 1637 aa23.07■■□□□ 1.28
NINJ1-204ENST00000489274 CEP162Q5TB80 1403 aa23.02■■□□□ 1.28
NINJ1-204ENST00000489274 UBTFP17480 764 aaKnown RBP23.02■■□□□ 1.28
NINJ1-204ENST00000489274 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
NINJ1-204ENST00000489274 KIF27Q86VH2 1401 aa22.95■■□□□ 1.26
NINJ1-204ENST00000489274 LAMC3Q9Y6N6 1575 aa22.91■■□□□ 1.26
NINJ1-204ENST00000489274 PRXQ9BXM0 1461 aa22.9■■□□□ 1.26
NINJ1-204ENST00000489274 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
NINJ1-204ENST00000489274 NESP48681 1621 aa22.89■■□□□ 1.25
NINJ1-204ENST00000489274 ERICH3Q5RHP9 1530 aa22.87■■□□□ 1.25
NINJ1-204ENST00000489274 FGD5Q6ZNL6 1462 aa22.84■■□□□ 1.25
NINJ1-204ENST00000489274 HRCP23327 699 aa22.82■■□□□ 1.24
NINJ1-204ENST00000489274 DNMBPQ6XZF7 1577 aa22.81■■□□□ 1.24
NINJ1-204ENST00000489274 DNAJC5BQ9UF47 199 aa22.81■■□□□ 1.24
NINJ1-204ENST00000489274 CUX2O14529 1486 aa22.78■■□□□ 1.24
NINJ1-204ENST00000489274 CLIP1P30622 1438 aa22.77■■□□□ 1.24
NINJ1-204ENST00000489274 PDS5BQ9NTI5 1447 aa22.77■■□□□ 1.23
NINJ1-204ENST00000489274 TOPBP1Q92547 1522 aa22.76■■□□□ 1.23
NINJ1-204ENST00000489274 IGF1RP08069 1367 aa22.73■■□□□ 1.23
NINJ1-204ENST00000489274 POLA1P09884 1462 aaPredicted RBP22.68■■□□□ 1.22
NINJ1-204ENST00000489274 ABCA10Q8WWZ4 1543 aa22.67■■□□□ 1.22
NINJ1-204ENST00000489274 PPARGC1BQ86YN6 1023 aaKnown RBP22.67■■□□□ 1.22
NINJ1-204ENST00000489274 URB2Q14146 1524 aaKnown RBP22.66■■□□□ 1.22
NINJ1-204ENST00000489274 VPS8Q8N3P4 1428 aa22.63■■□□□ 1.21
NINJ1-204ENST00000489274 RAD54L2Q9Y4B4 1467 aa22.62■■□□□ 1.21
NINJ1-204ENST00000489274 CARMIL1Q5VZK9 1371 aa22.61■■□□□ 1.21
NINJ1-204ENST00000489274 KIF21AQ7Z4S6 1674 aa22.54■■□□□ 1.2
NINJ1-204ENST00000489274 RANGAP1P46060 587 aaPredicted RBP22.5■■□□□ 1.19
NINJ1-204ENST00000489274 ARAP1Q96P48 1450 aa22.48■■□□□ 1.19
NINJ1-204ENST00000489274 WDR97A6NE52 1622 aa22.48■■□□□ 1.19
NINJ1-204ENST00000489274 CUL7Q14999 1698 aa22.43■■□□□ 1.18
NINJ1-204ENST00000489274 MRC2Q9UBG0 1479 aa22.43■■□□□ 1.18
NINJ1-204ENST00000489274 APLP2Q06481 763 aa22.43■■□□□ 1.18
NINJ1-204ENST00000489274 ARHGAP35Q9NRY4 1499 aa22.42■■□□□ 1.18
NINJ1-204ENST00000489274 ABCA5Q8WWZ7 1642 aa22.4■■□□□ 1.18
NINJ1-204ENST00000489274 TDRD9Q8NDG6 1382 aaKnown RBP22.38■■□□□ 1.17
NINJ1-204ENST00000489274 TTBK1Q5TCY1 1321 aaPredicted RBP22.38■■□□□ 1.17
NINJ1-204ENST00000489274 GAPVD1Q14C86 1478 aa22.38■■□□□ 1.17
NINJ1-204ENST00000489274 ZEB1P37275 1124 aaPredicted RBP22.38■■□□□ 1.17
NINJ1-204ENST00000489274 TARBP1Q13395 1621 aaKnown RBP22.37■■□□□ 1.17
NINJ1-204ENST00000489274 WDR62O43379 1518 aa22.28■■□□□ 1.16
NINJ1-204ENST00000489274 IFT140Q96RY7 1462 aa22.23■■□□□ 1.15
NINJ1-204ENST00000489274 EFCAB5A4FU69 1503 aa22.2■■□□□ 1.15
NINJ1-204ENST00000489274 CTTNBP2Q8WZ74 1663 aa22.19■■□□□ 1.14
NINJ1-204ENST00000489274 FHAD1B1AJZ9 1412 aa22.18■■□□□ 1.14
NINJ1-204ENST00000489274 ERCC6Q03468 1493 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms