RNA–Protein interactions for RNA: ENST00000392981.6

XRN1-202, Transcript of 5'-3' exoribonuclease 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene XRN1, Length 5,383 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-202ENST00000392981 CHIC1Q5VXU3 224 aa8.46□□□□□ -1.05
XRN1-202ENST00000392981 AEBP2Q6ZN18 517 aaPredicted RBP8.01□□□□□ -1.13
XRN1-202ENST00000392981 EHMT2Q96KQ7 1210 aa7.82□□□□□ -1.16
XRN1-202ENST00000392981 SLC24A1O60721 1099 aa7.49□□□□□ -1.21
XRN1-202ENST00000392981 PHF23Q9BUL5 403 aaPredicted RBP7.45□□□□□ -1.22
XRN1-202ENST00000392981 PLPPR3Q6T4P5 718 aa7.29□□□□□ -1.24
XRN1-202ENST00000392981 KCNA4P22459 653 aa7.14□□□□□ -1.27
XRN1-202ENST00000392981 SLC4A1APQ9BWU0 796 aaKnown RBP7.02□□□□□ -1.29
XRN1-202ENST00000392981 RTN4Q9NQC3 1192 aaKnown RBP7.01□□□□□ -1.29
XRN1-202ENST00000392981 AMER1Q5JTC6 1135 aaPredicted RBP6.97□□□□□ -1.29
XRN1-202ENST00000392981 CSRNP3Q8WYN3 585 aa6.97□□□□□ -1.29
XRN1-202ENST00000392981 ADRA2BP18089 450 aa6.84□□□□□ -1.31
XRN1-202ENST00000392981 SENP3Q9H4L4 574 aaPredicted RBP6.83□□□□□ -1.32
XRN1-202ENST00000392981 DCAF8L2P0C7V8 631 aa6.75□□□□□ -1.33
XRN1-202ENST00000392981 NCBP3Q53F19 620 aaKnown RBP6.65□□□□□ -1.35
XRN1-202ENST00000392981 PRKCSHP14314 528 aaPredicted RBP6.64□□□□□ -1.35
XRN1-202ENST00000392981 HAP1P54257 671 aaPredicted RBP6.63□□□□□ -1.35
XRN1-202ENST00000392981 FKBP8Q14318 412 aa6.56□□□□□ -1.36
XRN1-202ENST00000392981 PPP4R3CPQ6ZMV5 832 aa6.54□□□□□ -1.36
XRN1-202ENST00000392981 BCANQ96GW7 911 aa6.52□□□□□ -1.37
XRN1-202ENST00000392981 TPRNQ4KMQ1 711 aa6.49□□□□□ -1.37
XRN1-202ENST00000392981 PPP6R1Q9UPN7 881 aa6.48□□□□□ -1.37
XRN1-202ENST00000392981 RANGAP1P46060 587 aaPredicted RBP6.48□□□□□ -1.37
XRN1-202ENST00000392981 DAXXQ9UER7 740 aaPredicted RBP6.46□□□□□ -1.38
XRN1-202ENST00000392981 TAOK2Q9UL54 1235 aa6.42□□□□□ -1.38
XRN1-202ENST00000392981 TULP1O00294 542 aaPredicted RBP6.41□□□□□ -1.38
XRN1-202ENST00000392981 ZBTB22O15209 634 aa6.41□□□□□ -1.38
XRN1-202ENST00000392981 NPM3O75607 178 aaKnown RBP6.39□□□□□ -1.39
XRN1-202ENST00000392981 PLCB2Q00722 1185 aa6.37□□□□□ -1.39
XRN1-202ENST00000392981 FOXD4L1Q9NU39 408 aa6.36□□□□□ -1.39
XRN1-202ENST00000392981 TIMELESSQ9UNS1 1208 aa6.29□□□□□ -1.4
XRN1-202ENST00000392981 HOMEZQ8IX15 550 aa6.27□□□□□ -1.41
XRN1-202ENST00000392981 PIAS4Q8N2W9 510 aaPredicted RBP6.27□□□□□ -1.41
XRN1-202ENST00000392981 ARXQ96QS3 562 aa6.27□□□□□ -1.41
XRN1-202ENST00000392981 CFAP44Q96MT7 982 aa6.26□□□□□ -1.41
XRN1-202ENST00000392981 C14orf37Q86TY3 774 aa6.25□□□□□ -1.41
XRN1-202ENST00000392981 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.23□□□□□ -1.41
XRN1-202ENST00000392981 NBR1Q14596 966 aa6.22□□□□□ -1.41
XRN1-202ENST00000392981 FOXD1Q16676 465 aa6.21□□□□□ -1.41
XRN1-202ENST00000392981 GTF3C3Q9Y5Q9 886 aa6.21□□□□□ -1.42
XRN1-202ENST00000392981 PODXL2Q9NZ53 605 aa6.18□□□□□ -1.42
XRN1-202ENST00000392981 PAXIP1Q6ZW49 1069 aaPredicted RBP6.17□□□□□ -1.42
XRN1-202ENST00000392981 VSIG10Q8N0Z9 540 aa6.16□□□□□ -1.42
XRN1-202ENST00000392981 ERICH6Q7L0X2 663 aa6.15□□□□□ -1.42
XRN1-202ENST00000392981 SCAF1Q9H7N4 1312 aaKnown RBP6.14□□□□□ -1.43
XRN1-202ENST00000392981 CNKSR2Q8WXI2 1034 aa6.14□□□□□ -1.43
XRN1-202ENST00000392981 SUPT5HO00267 1087 aaKnown RBP6.11□□□□□ -1.43
XRN1-202ENST00000392981 FBLN2P98095 1184 aa6.07□□□□□ -1.44
XRN1-202ENST00000392981 FBXO3Q9UK99 471 aa6.05□□□□□ -1.44
XRN1-202ENST00000392981 KLHL34Q8N239 644 aa6.04□□□□□ -1.44
XRN1-202ENST00000392981 NPM2Q86SE8 214 aaKnown RBP5.99□□□□□ -1.45
XRN1-202ENST00000392981 KDM2AQ9Y2K7 1162 aa5.99□□□□□ -1.45
XRN1-202ENST00000392981 ARID3AQ99856 593 aa5.99□□□□□ -1.45
XRN1-202ENST00000392981 TMEM132AQ24JP5 1023 aa5.97□□□□□ -1.45
XRN1-202ENST00000392981 SPRYD3Q8NCJ5 442 aa5.96□□□□□ -1.46
XRN1-202ENST00000392981 ECM2O94769 699 aaPredicted RBP5.95□□□□□ -1.46
XRN1-202ENST00000392981 PELP1Q8IZL8 1130 aaKnown RBP5.94□□□□□ -1.46
XRN1-202ENST00000392981 TSHZ2Q9NRE2 1034 aa5.94□□□□□ -1.46
XRN1-202ENST00000392981 MYCNP04198 464 aaPredicted RBP5.93□□□□□ -1.46
XRN1-202ENST00000392981 VASPP50552 380 aaPredicted RBP5.9□□□□□ -1.47
XRN1-202ENST00000392981 BBXQ8WY36 941 aaPredicted RBP5.9□□□□□ -1.47
XRN1-202ENST00000392981 CHGAP10645 457 aaKnown RBP5.88□□□□□ -1.47
XRN1-202ENST00000392981 ATXN8OSP0DMR3 200 aa5.88□□□□□ -1.47
XRN1-202ENST00000392981 DCAF8L1A6NGE4 600 aa5.88□□□□□ -1.47
XRN1-202ENST00000392981 MYT1Q01538 1121 aa5.86□□□□□ -1.47
XRN1-202ENST00000392981 MAPK8IP2Q13387 824 aaPredicted RBP5.85□□□□□ -1.47
XRN1-202ENST00000392981 SPDYE4A6NLX3 237 aa5.84□□□□□ -1.48
XRN1-202ENST00000392981 CIZ1Q9ULV3 898 aaPredicted RBP5.83□□□□□ -1.48
XRN1-202ENST00000392981 MYT1LQ9UL68 1186 aa5.81□□□□□ -1.48
XRN1-202ENST00000392981 NEUROD2Q15784 382 aa5.8□□□□□ -1.48
XRN1-202ENST00000392981 UBTFP17480 764 aaKnown RBP5.79□□□□□ -1.48
XRN1-202ENST00000392981 TRIM26Q12899 539 aaPredicted RBP5.79□□□□□ -1.48
XRN1-202ENST00000392981 PLCD3Q8N3E9 789 aa5.79□□□□□ -1.48
XRN1-202ENST00000392981 IFNLR1Q8IU57 520 aaPredicted RBP5.78□□□□□ -1.48
XRN1-202ENST00000392981 RNF216Q9NWF9 866 aaPredicted RBP5.77□□□□□ -1.49
XRN1-202ENST00000392981 PKD2Q13563 968 aa5.77□□□□□ -1.49
XRN1-202ENST00000392981 ZBTB7CA1YPR0 619 aa5.77□□□□□ -1.49
XRN1-202ENST00000392981 SLC4A2P04920 1241 aa5.77□□□□□ -1.49
XRN1-202ENST00000392981 NPM1P06748 294 aaKnown RBP eCLIP5.75□□□□□ -1.49
XRN1-202ENST00000392981 TTBK1Q5TCY1 1321 aaPredicted RBP5.75□□□□□ -1.49
XRN1-202ENST00000392981 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.74□□□□□ -1.492e-6■■■□□ 15.9
XRN1-202ENST00000392981 SPOCK2Q92563 424 aa5.73□□□□□ -1.49
XRN1-202ENST00000392981 TRIM41Q8WV44 630 aa5.73□□□□□ -1.49
XRN1-202ENST00000392981 CCDC9Q9Y3X0 531 aaKnown RBP5.72□□□□□ -1.49
XRN1-202ENST00000392981 RGL2O15211 777 aa5.7□□□□□ -1.5
XRN1-202ENST00000392981 ATP1B4Q9UN42 357 aaPredicted RBP5.7□□□□□ -1.5
XRN1-202ENST00000392981 WDR70Q9NW82 654 aa5.68□□□□□ -1.5
XRN1-202ENST00000392981 PDIA4P13667 645 aaKnown RBP5.68□□□□□ -1.5
XRN1-202ENST00000392981 ATF5Q9Y2D1 282 aaPredicted RBP5.68□□□□□ -1.5
XRN1-202ENST00000392981 MIER1Q8N108 512 aa5.67□□□□□ -1.5
XRN1-202ENST00000392981 EIF5BO60841 1220 aaKnown RBP5.66□□□□□ -1.5
XRN1-202ENST00000392981 PLEKHG5O94827 1062 aa5.66□□□□□ -1.5
XRN1-202ENST00000392981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.66□□□□□ -1.5
XRN1-202ENST00000392981 HNRNPUL2Q1KMD3 747 aaKnown RBP5.66□□□□□ -1.5
XRN1-202ENST00000392981 SAMD1Q6SPF0 538 aaPredicted RBP5.65□□□□□ -1.5
XRN1-202ENST00000392981 CDK11BP21127 795 aaKnown RBP5.63□□□□□ -1.51
XRN1-202ENST00000392981 LMOD2Q6P5Q4 547 aa5.63□□□□□ -1.51
XRN1-202ENST00000392981 POLR3GLQ9BT43 218 aa5.63□□□□□ -1.51
XRN1-202ENST00000392981 CDK11AQ9UQ88 783 aaPredicted RBP5.63□□□□□ -1.51
XRN1-202ENST00000392981 RSPH6AQ9H0K4 717 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms