Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC135983.2-203ENST00000454486 1613 ntBASIC26.27■■□□□ 1.8
TTC28Q96AY4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.27■■□□□ 1.8
TTC28Q96AY4 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.27■■□□□ 1.8
TTC28Q96AY4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TTC28Q96AY4 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
TTC28Q96AY4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.26■■□□□ 1.79
TTC28Q96AY4 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TTC28Q96AY4 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.25■■□□□ 1.79
TTC28Q96AY4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.25■■□□□ 1.79
TTC28Q96AY4 AC093536.1-201ENST00000569153 554 ntBASIC26.25■■□□□ 1.79
TTC28Q96AY4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
TTC28Q96AY4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
TTC28Q96AY4 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
TTC28Q96AY4 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TTC28Q96AY4 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TTC28Q96AY4 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.23■■□□□ 1.79
TTC28Q96AY4 AC120057.4-201ENST00000624722 1615 ntBASIC26.23■■□□□ 1.79
TTC28Q96AY4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.23■■□□□ 1.79
TTC28Q96AY4 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
TTC28Q96AY4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.22■■□□□ 1.79
TTC28Q96AY4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TTC28Q96AY4 AC131281.2-201ENST00000520478 145 ntBASIC26.22■■□□□ 1.79
TTC28Q96AY4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC26.2■■□□□ 1.79
TTC28Q96AY4 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.2■■□□□ 1.78
TTC28Q96AY4 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TTC28Q96AY4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.2■■□□□ 1.78
TTC28Q96AY4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.2■■□□□ 1.78
TTC28Q96AY4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.2■■□□□ 1.78
TTC28Q96AY4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.2■■□□□ 1.78
TTC28Q96AY4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
TTC28Q96AY4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.2■■□□□ 1.78
TTC28Q96AY4 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.19■■□□□ 1.78
TTC28Q96AY4 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
TTC28Q96AY4 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.19■■□□□ 1.78
TTC28Q96AY4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TTC28Q96AY4 ZNRF2P3-201ENST00000424200 374 ntBASIC26.19■■□□□ 1.78
TTC28Q96AY4 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.19■■□□□ 1.78
TTC28Q96AY4 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
TTC28Q96AY4 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
TTC28Q96AY4 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
TTC28Q96AY4 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.17■■□□□ 1.78
TTC28Q96AY4 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
TTC28Q96AY4 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC26.17■■□□□ 1.78
TTC28Q96AY4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.17■■□□□ 1.78
TTC28Q96AY4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC26.17■■□□□ 1.78
TTC28Q96AY4 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
TTC28Q96AY4 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
TTC28Q96AY4 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
TTC28Q96AY4 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
TTC28Q96AY4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.16■■□□□ 1.78
TTC28Q96AY4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
TTC28Q96AY4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TTC28Q96AY4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
TTC28Q96AY4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
TTC28Q96AY4 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TTC28Q96AY4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
TTC28Q96AY4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.15■■□□□ 1.78
TTC28Q96AY4 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
TTC28Q96AY4 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
TTC28Q96AY4 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
TTC28Q96AY4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
TTC28Q96AY4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
TTC28Q96AY4 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
TTC28Q96AY4 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.77
TTC28Q96AY4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.14■■□□□ 1.77
TTC28Q96AY4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.14■■□□□ 1.77
TTC28Q96AY4 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
TTC28Q96AY4 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.13■■□□□ 1.77
TTC28Q96AY4 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.13■■□□□ 1.77
TTC28Q96AY4 KRT125P-201ENST00000546827 989 ntBASIC26.13■■□□□ 1.77
TTC28Q96AY4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
TTC28Q96AY4 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.13■■□□□ 1.77
TTC28Q96AY4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
TTC28Q96AY4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
TTC28Q96AY4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
TTC28Q96AY4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TTC28Q96AY4 MIR5787-201ENST00000611784 55 ntBASIC26.12■■□□□ 1.77
TTC28Q96AY4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
TTC28Q96AY4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
TTC28Q96AY4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
TTC28Q96AY4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.1■■□□□ 1.77
TTC28Q96AY4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.1■■□□□ 1.77
TTC28Q96AY4 TK2-216ENST00000564917 1156 ntTSL 3 BASIC26.1■■□□□ 1.77
TTC28Q96AY4 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.1■■□□□ 1.77
TTC28Q96AY4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC26.1■■□□□ 1.77
TTC28Q96AY4 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.1■■□□□ 1.77
TTC28Q96AY4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
TTC28Q96AY4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.09■■□□□ 1.77
TTC28Q96AY4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.09■■□□□ 1.77
TTC28Q96AY4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.09■■□□□ 1.77
TTC28Q96AY4 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
TTC28Q96AY4 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.09■■□□□ 1.77
TTC28Q96AY4 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.09■■□□□ 1.77
TTC28Q96AY4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26.09■■□□□ 1.77
TTC28Q96AY4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
TTC28Q96AY4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
TTC28Q96AY4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
TTC28Q96AY4 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
TTC28Q96AY4 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
TTC28Q96AY4 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms