Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PVT1_1.1-201ENST00000615125 194 ntBASIC30.47■■■□□ 2.47
SCN4AP35499 MIR935-201ENST00000401179 91 ntBASIC30.46■■■□□ 2.47
SCN4AP35499 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
SCN4AP35499 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.45■■■□□ 2.47
SCN4AP35499 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
SCN4AP35499 AC103834.1-201ENST00000520383 144 ntBASIC30.45■■■□□ 2.46
SCN4AP35499 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SCN4AP35499 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC30.44■■■□□ 2.46
SCN4AP35499 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SCN4AP35499 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SCN4AP35499 YBX1P4-201ENST00000392794 808 ntBASIC30.44■■■□□ 2.46
SCN4AP35499 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC30.44■■■□□ 2.46
SCN4AP35499 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
SCN4AP35499 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
SCN4AP35499 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
SCN4AP35499 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC30.43■■■□□ 2.46
SCN4AP35499 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
SCN4AP35499 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC30.43■■■□□ 2.46
SCN4AP35499 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SCN4AP35499 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SCN4AP35499 HYI-210ENST00000486909 905 ntTSL 5 BASIC30.42■■■□□ 2.46
SCN4AP35499 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC30.42■■■□□ 2.46
SCN4AP35499 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.42■■■□□ 2.46
SCN4AP35499 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.41■■■□□ 2.46
SCN4AP35499 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC30.41■■■□□ 2.46
SCN4AP35499 AC103724.3-201ENST00000564481 992 ntBASIC30.41■■■□□ 2.46
SCN4AP35499 MIR6765-201ENST00000614092 87 ntBASIC30.41■■■□□ 2.46
SCN4AP35499 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.4■■■□□ 2.46
SCN4AP35499 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC30.4■■■□□ 2.46
SCN4AP35499 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC30.4■■■□□ 2.46
SCN4AP35499 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.4■■■□□ 2.46
SCN4AP35499 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
SCN4AP35499 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SCN4AP35499 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SCN4AP35499 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SCN4AP35499 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SCN4AP35499 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
SCN4AP35499 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SCN4AP35499 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
SCN4AP35499 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC30.38■■■□□ 2.45
SCN4AP35499 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SCN4AP35499 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
SCN4AP35499 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
SCN4AP35499 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC30.38■■■□□ 2.45
SCN4AP35499 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
SCN4AP35499 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
SCN4AP35499 AL356441.2-201ENST00000443009 864 ntBASIC30.37■■■□□ 2.45
SCN4AP35499 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.37■■■□□ 2.45
SCN4AP35499 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.37■■■□□ 2.45
SCN4AP35499 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC30.37■■■□□ 2.45
SCN4AP35499 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SCN4AP35499 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC30.36■■■□□ 2.45
SCN4AP35499 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
SCN4AP35499 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
SCN4AP35499 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC30.35■■■□□ 2.45
SCN4AP35499 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
SCN4AP35499 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SCN4AP35499 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC30.33■■■□□ 2.45
SCN4AP35499 PRTG-204ENST00000561292 833 ntTSL 3 BASIC30.33■■■□□ 2.45
SCN4AP35499 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
SCN4AP35499 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SCN4AP35499 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SCN4AP35499 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC30.32■■■□□ 2.44
SCN4AP35499 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
SCN4AP35499 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.31■■■□□ 2.44
SCN4AP35499 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC30.31■■■□□ 2.44
SCN4AP35499 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC30.31■■■□□ 2.44
SCN4AP35499 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
SCN4AP35499 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
SCN4AP35499 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
SCN4AP35499 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.3■■■□□ 2.44
SCN4AP35499 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
SCN4AP35499 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC30.3■■■□□ 2.44
SCN4AP35499 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SCN4AP35499 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.29■■■□□ 2.44
SCN4AP35499 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SCN4AP35499 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SCN4AP35499 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SCN4AP35499 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
SCN4AP35499 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC30.27■■■□□ 2.44
SCN4AP35499 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.27■■■□□ 2.44
SCN4AP35499 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC30.27■■■□□ 2.44
SCN4AP35499 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SCN4AP35499 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SCN4AP35499 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SCN4AP35499 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SCN4AP35499 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30.26■■■□□ 2.44
SCN4AP35499 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SCN4AP35499 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC30.26■■■□□ 2.43
SCN4AP35499 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SCN4AP35499 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SCN4AP35499 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
SCN4AP35499 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
SCN4AP35499 AL135925.1-201ENST00000605920 1701 ntBASIC30.24■■■□□ 2.43
SCN4AP35499 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SCN4AP35499 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
SCN4AP35499 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SCN4AP35499 PFN2-211ENST00000489155 636 ntTSL 4 BASIC30.24■■■□□ 2.43
SCN4AP35499 AL359258.2-201ENST00000564063 1566 ntBASIC30.23■■■□□ 2.43
SCN4AP35499 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC30.22■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms