Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.84■□□□□ 0.45
LDLRP01130 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 AC116562.2-201ENST00000507042 360 ntBASIC17.84■□□□□ 0.45
LDLRP01130 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.84■□□□□ 0.45
LDLRP01130 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.84■□□□□ 0.45
LDLRP01130 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
LDLRP01130 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.84■□□□□ 0.45
LDLRP01130 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.84■□□□□ 0.45
LDLRP01130 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
LDLRP01130 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
LDLRP01130 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
LDLRP01130 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDLRP01130 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDLRP01130 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.83■□□□□ 0.44
LDLRP01130 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.83■□□□□ 0.44
LDLRP01130 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.83■□□□□ 0.44
LDLRP01130 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.83■□□□□ 0.44
LDLRP01130 AC004264.1-201ENST00000608354 794 ntBASIC17.83■□□□□ 0.44
LDLRP01130 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.83■□□□□ 0.44
LDLRP01130 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.83■□□□□ 0.44
LDLRP01130 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
LDLRP01130 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LDLRP01130 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LDLRP01130 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.44
LDLRP01130 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDLRP01130 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.83■□□□□ 0.44
LDLRP01130 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LDLRP01130 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDLRP01130 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDLRP01130 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
LDLRP01130 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.82■□□□□ 0.44
LDLRP01130 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.82■□□□□ 0.44
LDLRP01130 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LDLRP01130 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LDLRP01130 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LDLRP01130 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
LDLRP01130 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.82■□□□□ 0.44
LDLRP01130 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.82■□□□□ 0.44
LDLRP01130 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.82■□□□□ 0.44
LDLRP01130 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.82■□□□□ 0.44
LDLRP01130 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.82■□□□□ 0.44
LDLRP01130 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.82■□□□□ 0.44
LDLRP01130 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LDLRP01130 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.82■□□□□ 0.44
LDLRP01130 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LDLRP01130 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.82■□□□□ 0.44
LDLRP01130 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.82■□□□□ 0.44
LDLRP01130 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.82■□□□□ 0.44
LDLRP01130 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDLRP01130 AC073592.3-201ENST00000625118 1834 ntBASIC17.82■□□□□ 0.44
LDLRP01130 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.81■□□□□ 0.44
LDLRP01130 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.81■□□□□ 0.44
LDLRP01130 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LDLRP01130 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LDLRP01130 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.81■□□□□ 0.44
LDLRP01130 UPK3BP1-201ENST00000428678 509 ntBASIC17.81■□□□□ 0.44
LDLRP01130 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.81■□□□□ 0.44
LDLRP01130 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.81■□□□□ 0.44
LDLRP01130 AC010203.1-204ENST00000548782 407 ntBASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms