Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.445e-6■■■□□ 17.9
XRN2Q9H0D6 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.455e-6■■■□□ 17.9
XRN2Q9H0D6 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.455e-6■■■□□ 17.9
XRN2Q9H0D6 ZEB1-209ENST00000542879 3645 ntTSL 25.42□□□□□ -1.545e-6■■■□□ 17.9
XRN2Q9H0D6 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.426e-6■■■□□ 17.9
XRN2Q9H0D6 MARCH7-205ENST00000421037 559 ntTSL 415.84■□□□□ 0.132e-10■■■□□ 17.9
XRN2Q9H0D6 MARCH7-207ENST00000473749 821 ntTSL 314.4□□□□□ -0.12e-10■■■□□ 17.9
XRN2Q9H0D6 MARCH7-209ENST00000539065 3303 ntTSL 2 BASIC12.18□□□□□ -0.462e-10■■■□□ 17.9
XRN2Q9H0D6 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.372e-10■■■□□ 17.9
XRN2Q9H0D6 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.912e-10■■■□□ 17.9
XRN2Q9H0D6 AKAP8L-204ENST00000594893 1453 ntTSL 219.83■□□□□ 0.764e-7■■■□□ 17.9
XRN2Q9H0D6 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.045e-6■■■□□ 17.9
XRN2Q9H0D6 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.35e-6■■■□□ 17.9
XRN2Q9H0D6 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.385e-6■■■□□ 17.9
XRN2Q9H0D6 SLC6A8-203ENST00000429147 334 ntTSL 219.71■□□□□ 0.753e-8■■■□□ 17.8
XRN2Q9H0D6 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.563e-6■■■□□ 17.8
XRN2Q9H0D6 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.333e-6■■■□□ 17.8
XRN2Q9H0D6 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.453e-6■■■□□ 17.8
XRN2Q9H0D6 MAD1L1-212ENST00000450235 850 ntTSL 320.62■□□□□ 0.897e-12■■■□□ 17.8
XRN2Q9H0D6 MTHFD1L-210ENST00000478643 421 ntTSL 312.07□□□□□ -0.485e-6■■■□□ 17.8
XRN2Q9H0D6 AMDHD2-210ENST00000565570 1844 ntTSL 520.07■□□□□ 0.83e-7■■■□□ 17.8
XRN2Q9H0D6 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC13.17□□□□□ -0.33e-7■■■□□ 17.8
XRN2Q9H0D6 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.4■□□□□ 0.74e-7■■■□□ 17.8
XRN2Q9H0D6 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.284e-7■■■□□ 17.8
XRN2Q9H0D6 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC13.41□□□□□ -0.264e-7■■■□□ 17.8
XRN2Q9H0D6 EIF4A1-218ENST00000581544 1444 ntTSL 212.18□□□□□ -0.464e-7■■■□□ 17.8
XRN2Q9H0D6 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC11.45□□□□□ -0.584e-7■■■□□ 17.8
XRN2Q9H0D6 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.664e-7■■■□□ 17.8
XRN2Q9H0D6 EIF4A1-202ENST00000396527 1169 ntTSL 28.27□□□□□ -1.094e-7■■■□□ 17.8
XRN2Q9H0D6 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.674e-6■■■□□ 17.8
XRN2Q9H0D6 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.93■□□□□ 0.628e-7■■■□□ 17.8
XRN2Q9H0D6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.394e-6■■■□□ 17.8
XRN2Q9H0D6 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.378e-7■■■□□ 17.8
XRN2Q9H0D6 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.57■□□□□ 0.248e-7■■■□□ 17.8
XRN2Q9H0D6 TRAPPC12-206ENST00000417243 1047 ntTSL 514.09□□□□□ -0.154e-6■■■□□ 17.8
XRN2Q9H0D6 PC-202ENST00000393958 4005 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.793e-6■■■□□ 17.8
XRN2Q9H0D6 PC-203ENST00000393960 4192 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.813e-6■■■□□ 17.8
XRN2Q9H0D6 PC-201ENST00000393955 4004 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.833e-6■■■□□ 17.8
XRN2Q9H0D6 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.543e-6■■■□□ 17.8
XRN2Q9H0D6 SHANK3-202ENST00000414786 7394 ntTSL 518.15■□□□□ 0.53e-6■■■□□ 17.8
XRN2Q9H0D6 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.04■□□□□ 0.163e-6■■■□□ 17.8
XRN2Q9H0D6 MBOAT2-207ENST00000477073 754 ntTSL 324.94■■□□□ 1.582e-11■■■□□ 17.7
XRN2Q9H0D6 BCL6-205ENST00000438077 709 ntTSL 324.41■■□□□ 1.51e-9■■■□□ 17.7
XRN2Q9H0D6 MBOAT2-203ENST00000462696 580 ntTSL 419.42■□□□□ 0.72e-11■■■□□ 17.7
XRN2Q9H0D6 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.072e-11■■■□□ 17.7
XRN2Q9H0D6 ZFAND5-201ENST00000237937 5310 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.491e-8■■■□□ 17.7
XRN2Q9H0D6 MBOAT2-209ENST00000486484 1351 ntTSL 24.48□□□□□ -1.692e-11■■■□□ 17.7
XRN2Q9H0D6 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.33■□□□□ 0.362e-6■■■□□ 17.7
XRN2Q9H0D6 GOLGA2-202ENST00000450617 1439 ntTSL 516.71■□□□□ 0.272e-6■■■□□ 17.7
XRN2Q9H0D6 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.35□□□□□ -0.112e-6■■■□□ 17.7
XRN2Q9H0D6 GOLGA2-214ENST00000611957 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.592e-6■■■□□ 17.7
XRN2Q9H0D6 GOLGA2-201ENST00000421699 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.642e-6■■■□□ 17.7
XRN2Q9H0D6 RHBDF2-202ENST00000585701 572 ntTSL 416.73■□□□□ 0.272e-9■■■□□ 17.7
XRN2Q9H0D6 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.193e-6■■■□□ 17.7
XRN2Q9H0D6 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.013e-6■■■□□ 17.7
XRN2Q9H0D6 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.253e-6■■■□□ 17.7
XRN2Q9H0D6 RHBDF2-210ENST00000591192 554 ntTSL 413.24□□□□□ -0.292e-9■■■□□ 17.7
XRN2Q9H0D6 RHBDF2-205ENST00000589526 629 ntTSL 213.24□□□□□ -0.292e-9■■■□□ 17.7
XRN2Q9H0D6 SLC38A3-206ENST00000614032 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.534e-6■■■□□ 17.7
XRN2Q9H0D6 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.14■□□□□ 0.663e-7■■■□□ 17.7
XRN2Q9H0D6 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.45■□□□□ 0.543e-7■■■□□ 17.7
XRN2Q9H0D6 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.393e-7■■■□□ 17.7
XRN2Q9H0D6 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.191e-6■■■□□ 17.7
XRN2Q9H0D6 CSNK1G2-209ENST00000591752 648 ntTSL 520.42■□□□□ 0.861e-6■■■□□ 17.7
XRN2Q9H0D6 USP34-204ENST00000453133 1409 ntTSL 55.62□□□□□ -1.513e-6■■■□□ 17.7
XRN2Q9H0D6 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.81e-7■■■□□ 17.7
XRN2Q9H0D6 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.84■■□□□ 1.731e-7■■■□□ 17.7
XRN2Q9H0D6 YJEFN3-202ENST00000458210 2785 ntTSL 215.58■□□□□ 0.091e-7■■■□□ 17.7
XRN2Q9H0D6 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.458e-7■■■□□ 17.7
XRN2Q9H0D6 C16orf52-204ENST00000562695 695 ntTSL 2 BASIC13.25□□□□□ -0.291e-7■■■□□ 17.7
XRN2Q9H0D6 C16orf52-203ENST00000562186 605 ntTSL 39.49□□□□□ -0.891e-7■■■□□ 17.7
XRN2Q9H0D6 KLHDC4-223ENST00000568499 445 ntTSL 316.91■□□□□ 0.35e-7■■■□□ 17.7
XRN2Q9H0D6 AMBP-204ENST00000603230 1057 ntTSL 1 (best)17.94■□□□□ 0.464e-7■■■□□ 17.7
XRN2Q9H0D6 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.314e-7■■■□□ 17.7
XRN2Q9H0D6 AMBP-203ENST00000540645 1356 ntTSL 214.45□□□□□ -0.14e-7■■■□□ 17.7
XRN2Q9H0D6 CPSF7-209ENST00000463244 545 ntTSL 425.57■■□□□ 1.682e-10■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-216ENST00000580888 710 ntTSL 220.4■□□□□ 0.864e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-208ENST00000578476 573 ntTSL 218.99■□□□□ 0.634e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-214ENST00000580461 909 ntTSL 214.96□□□□□ -0.014e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-236ENST00000584901 1021 ntTSL 214.3□□□□□ -0.124e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-226ENST00000582848 591 ntTSL 314.3□□□□□ -0.124e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-213ENST00000579139 568 ntTSL 413.38□□□□□ -0.274e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-223ENST00000582169 552 ntTSL 412.27□□□□□ -0.454e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-229ENST00000583802 563 ntTSL 412.08□□□□□ -0.484e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-209ENST00000578495 916 ntTSL 511.96□□□□□ -0.494e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-231ENST00000584054 716 ntTSL 211.27□□□□□ -0.614e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-215ENST00000580886 562 ntTSL 211.27□□□□□ -0.614e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-212ENST00000579085 569 ntTSL 410.97□□□□□ -0.654e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-233ENST00000584784 818 ntTSL 510.74□□□□□ -0.694e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-232ENST00000584712 782 ntTSL 210.56□□□□□ -0.724e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-237ENST00000585024 577 ntTSL 410.56□□□□□ -0.724e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-230ENST00000583899 665 ntTSL 37.41□□□□□ -1.224e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-211ENST00000578754 547 ntTSL 46.34□□□□□ -1.394e-7■■■□□ 17.7
XRN2Q9H0D6 EIF4A1-224ENST00000582213 560 ntTSL 44.85□□□□□ -1.634e-7■■■□□ 17.7
XRN2Q9H0D6 CLMN-202ENST00000553733 565 ntTSL 421.95■■□□□ 1.17e-7■■■□□ 17.6
XRN2Q9H0D6 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC24.46■■□□□ 1.516e-7■■■□□ 17.6
XRN2Q9H0D6 BX322557.1-201ENST00000454115 389 ntTSL 1 (best)23.49■■□□□ 1.356e-7■■■□□ 17.6
XRN2Q9H0D6 ERF-203ENST00000593944 555 ntTSL 422.45■■□□□ 1.182e-7■■■□□ 17.6
XRN2Q9H0D6 ERF-205ENST00000595941 227 ntTSL 49.16□□□□□ -0.942e-7■■■□□ 17.6
XRN2Q9H0D6 KMT5A-206ENST00000462311 747 ntTSL 525.22■■□□□ 1.632e-8■■■□□ 17.6
Retrieved 100 of 21,068 protein–RNA pairs in 123.3 ms