RNA–Protein interactions for RNA: ENST00000414786.6

SHANK3-202, Transcript of SH3 and multiple ankyrin repeat domains 3, humanhuman

TSL 5

Gene SHANK3, Length 7,394 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3-202ENST00000414786 DCAF8L2P0C7V8 631 aa32.62■■■□□ 2.81
SHANK3-202ENST00000414786 EHMT2Q96KQ7 1210 aa30.87■■■□□ 2.53
SHANK3-202ENST00000414786 SUPT5HO00267 1087 aaKnown RBP30.1■■■□□ 2.41
SHANK3-202ENST00000414786 TTBK1Q5TCY1 1321 aaPredicted RBP29.67■■■□□ 2.34
SHANK3-202ENST00000414786 PELP1Q8IZL8 1130 aaKnown RBP29.49■■■□□ 2.31
SHANK3-202ENST00000414786 SHROOM4Q9ULL8 1493 aa29.35■■■□□ 2.29
SHANK3-202ENST00000414786 RANGAP1P46060 587 aaPredicted RBP29.26■■■□□ 2.27
SHANK3-202ENST00000414786 APLP2Q06481 763 aa29.15■■■□□ 2.26
SHANK3-202ENST00000414786 ERICH6Q7L0X2 663 aa29.09■■■□□ 2.25
SHANK3-202ENST00000414786 ATP1B4Q9UN42 357 aaPredicted RBP28.97■■■□□ 2.23
SHANK3-202ENST00000414786 FAM9AQ8IZU1 332 aaPredicted RBP28.93■■■□□ 2.22
SHANK3-202ENST00000414786 MYT1Q01538 1121 aa28.63■■■□□ 2.17
SHANK3-202ENST00000414786 PCGF6Q9BYE7 350 aa28.57■■■□□ 2.16
SHANK3-202ENST00000414786 CHIC1Q5VXU3 224 aa28.37■■■□□ 2.13
SHANK3-202ENST00000414786 CCER1Q8TC90 406 aaPredicted RBP28.29■■■□□ 2.12
SHANK3-202ENST00000414786 YTHDC1Q96MU7 727 aaKnown RBP28.25■■■□□ 2.11
SHANK3-202ENST00000414786 MYT1LQ9UL68 1186 aa28.24■■■□□ 2.11
SHANK3-202ENST00000414786 CNGB1Q14028 1251 aaPredicted RBP28.17■■■□□ 2.1
SHANK3-202ENST00000414786 POLR3GLQ9BT43 218 aa28.08■■■□□ 2.09
SHANK3-202ENST00000414786 NEFLP07196 543 aa27.85■■■□□ 2.05
SHANK3-202ENST00000414786 PPARGC1BQ86YN6 1023 aaKnown RBP27.83■■■□□ 2.05
SHANK3-202ENST00000414786 SLC4A1APQ9BWU0 796 aaKnown RBP27.81■■■□□ 2.04
SHANK3-202ENST00000414786 CENPBP07199 599 aaPredicted RBP27.8■■■□□ 2.04
SHANK3-202ENST00000414786 DAXXQ9UER7 740 aaPredicted RBP27.68■■■□□ 2.02
SHANK3-202ENST00000414786 UBTFP17480 764 aaKnown RBP27.67■■■□□ 2.02
SHANK3-202ENST00000414786 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.64■■■□□ 2.02
SHANK3-202ENST00000414786 HNRNPUL2Q1KMD3 747 aaKnown RBP27.64■■■□□ 2.02
SHANK3-202ENST00000414786 ITGAEP38570 1179 aa27.55■■■□□ 2
SHANK3-202ENST00000414786 BCL11AQ9H165 835 aa27.37■■□□□ 1.97
SHANK3-202ENST00000414786 TRIM41Q8WV44 630 aa27.33■■□□□ 1.97
SHANK3-202ENST00000414786 SLC24A1O60721 1099 aa27.19■■□□□ 1.94
SHANK3-202ENST00000414786 CLSPNQ9HAW4 1339 aa27.14■■□□□ 1.94
SHANK3-202ENST00000414786 ZNF316A6NFI3 1004 aaPredicted RBP26.98■■□□□ 1.91
SHANK3-202ENST00000414786 ZEB1P37275 1124 aaPredicted RBP26.87■■□□□ 1.89
SHANK3-202ENST00000414786 PLPPR3Q6T4P5 718 aa26.74■■□□□ 1.87
SHANK3-202ENST00000414786 BCANQ96GW7 911 aa26.69■■□□□ 1.86
SHANK3-202ENST00000414786 RTL5Q5HYW3 569 aaPredicted RBP26.57■■□□□ 1.84
SHANK3-202ENST00000414786 ZNF326Q5BKZ1 582 aaKnown RBP26.49■■□□□ 1.83
SHANK3-202ENST00000414786 ZBTB47Q9UFB7 747 aaPredicted RBP26.46■■□□□ 1.83
SHANK3-202ENST00000414786 TRIM52Q96A61 297 aa26.39■■□□□ 1.81
SHANK3-202ENST00000414786 FAM50AQ14320 339 aaKnown RBP26.32■■□□□ 1.8
SHANK3-202ENST00000414786 NEUROD1Q13562 356 aa26.31■■□□□ 1.8
SHANK3-202ENST00000414786 NISCHQ9Y2I1 1504 aa26.27■■□□□ 1.8
SHANK3-202ENST00000414786 CANXP27824 592 aaKnown RBP26.22■■□□□ 1.79
SHANK3-202ENST00000414786 FBLN2P98095 1184 aa26.22■■□□□ 1.79
SHANK3-202ENST00000414786 A0A0G2JS52 829 aa26.15■■□□□ 1.78
SHANK3-202ENST00000414786 ARID3CA6NKF2 412 aa26.13■■□□□ 1.77
SHANK3-202ENST00000414786 PLEKHG5O94827 1062 aa26.1■■□□□ 1.77
SHANK3-202ENST00000414786 LOC105371045A0A1W2PR82 267 aa26.05■■□□□ 1.76
SHANK3-202ENST00000414786 HRCP23327 699 aa26.04■■□□□ 1.76
SHANK3-202ENST00000414786 SCAF1Q9H7N4 1312 aaKnown RBP26■■□□□ 1.75
SHANK3-202ENST00000414786 TRIM26Q12899 539 aaPredicted RBP25.95■■□□□ 1.75
SHANK3-202ENST00000414786 NPM2Q86SE8 214 aaKnown RBP25.94■■□□□ 1.74
SHANK3-202ENST00000414786 SENP3Q9H4L4 574 aaPredicted RBP25.9■■□□□ 1.74
SHANK3-202ENST00000414786 NEFMP07197 916 aa25.88■■□□□ 1.73
SHANK3-202ENST00000414786 TULP1O00294 542 aaPredicted RBP25.83■■□□□ 1.73
SHANK3-202ENST00000414786 ARXQ96QS3 562 aa25.77■■□□□ 1.72
SHANK3-202ENST00000414786 CHGAP10645 457 aaKnown RBP25.75■■□□□ 1.71
SHANK3-202ENST00000414786 DIEXFQ68CQ4 756 aaKnown RBP25.72■■□□□ 1.71
SHANK3-202ENST00000414786 EIF5BO60841 1220 aaKnown RBP25.71■■□□□ 1.71
SHANK3-202ENST00000414786 ZBTB7CA1YPR0 619 aa25.71■■□□□ 1.71
SHANK3-202ENST00000414786 ESF1Q9H501 851 aaKnown RBP25.7■■□□□ 1.71
SHANK3-202ENST00000414786 STAG3Q9UJ98 1225 aa25.68■■□□□ 1.7
SHANK3-202ENST00000414786 CDK11AQ9UQ88 783 aaPredicted RBP25.67■■□□□ 1.7
SHANK3-202ENST00000414786 ZNF777Q9ULD5 760 aaPredicted RBP25.65■■□□□ 1.7
SHANK3-202ENST00000414786 HSP90AA1P07900 732 aaKnown RBP25.64■■□□□ 1.69
SHANK3-202ENST00000414786 SALL2Q9Y467 1007 aaPredicted RBP25.62■■□□□ 1.69
SHANK3-202ENST00000414786 P3H3Q8IVL6 736 aa25.59■■□□□ 1.69
SHANK3-202ENST00000414786 ANP32CO43423 234 aa25.59■■□□□ 1.69
SHANK3-202ENST00000414786 NCBP3Q53F19 620 aaKnown RBP25.58■■□□□ 1.69
SHANK3-202ENST00000414786 PABPN1Q86U42 306 aaKnown RBP eCLIP25.49■■□□□ 1.67
SHANK3-202ENST00000414786 CDK11BP21127 795 aaKnown RBP25.43■■□□□ 1.66
SHANK3-202ENST00000414786 ANP32BQ92688 251 aaKnown RBP25.39■■□□□ 1.66
SHANK3-202ENST00000414786 TPRNQ4KMQ1 711 aa25.38■■□□□ 1.65
SHANK3-202ENST00000414786 TAOK2Q9UL54 1235 aa25.38■■□□□ 1.65
SHANK3-202ENST00000414786 GTF3C3Q9Y5Q9 886 aa25.37■■□□□ 1.65
SHANK3-202ENST00000414786 C14orf37Q86TY3 774 aa25.36■■□□□ 1.65
SHANK3-202ENST00000414786 ANP32AP39687 249 aaKnown RBP25.31■■□□□ 1.64
SHANK3-202ENST00000414786 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.19■■□□□ 1.621e-6■□□□□ 9.5
SHANK3-202ENST00000414786 NBR1Q14596 966 aa25.16■■□□□ 1.62
SHANK3-202ENST00000414786 HAP1P54257 671 aaPredicted RBP25.11■■□□□ 1.61
SHANK3-202ENST00000414786 FAM9BQ8IZU0 186 aa25.1■■□□□ 1.61
SHANK3-202ENST00000414786 SENP3-EIF4A1A0A087X0R7 540 aa25.05■■□□□ 1.6
SHANK3-202ENST00000414786 UPF2Q9HAU5 1272 aaKnown RBP25.04■■□□□ 1.6
SHANK3-202ENST00000414786 NPHP1O15259 732 aa24.98■■□□□ 1.59
SHANK3-202ENST00000414786 FKBP8Q14318 412 aa24.94■■□□□ 1.58
SHANK3-202ENST00000414786 KDM2AQ9Y2K7 1162 aa24.94■■□□□ 1.58
SHANK3-202ENST00000414786 NPM1P06748 294 aaKnown RBP eCLIP24.93■■□□□ 1.58
SHANK3-202ENST00000414786 AMER1Q5JTC6 1135 aaPredicted RBP24.9■■□□□ 1.58
SHANK3-202ENST00000414786 CLSTN1O94985 981 aa24.87■■□□□ 1.57
SHANK3-202ENST00000414786 IRX6P78412 446 aaPredicted RBP24.87■■□□□ 1.57
SHANK3-202ENST00000414786 LMOD2Q6P5Q4 547 aa24.85■■□□□ 1.57
SHANK3-202ENST00000414786 HNRNPUQ00839 825 aaKnown RBP eCLIP24.83■■□□□ 1.57
SHANK3-202ENST00000414786 CHIC2Q9UKJ5 165 aa24.82■■□□□ 1.56
SHANK3-202ENST00000414786 NCLP19338 710 aaKnown RBP24.78■■□□□ 1.56
SHANK3-202ENST00000414786 PPM1GO15355 546 aaPredicted RBP24.76■■□□□ 1.55
SHANK3-202ENST00000414786 WDR43Q15061 677 aaKnown RBP eCLIP24.75■■□□□ 1.55
SHANK3-202ENST00000414786 ARID4BQ4LE39 1312 aaPredicted RBP24.75■■□□□ 1.55
SHANK3-202ENST00000414786 MYH16Q9H6N6 1097 aa24.73■■□□□ 1.55
SHANK3-202ENST00000414786 PPP1R15AO75807 674 aaPredicted RBP24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms