RNA–Protein interactions for RNA: ENST00000542879.5

ZEB1-209, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 2

Gene ZEB1, Length 3,645 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-209ENST00000542879 NISCHQ9Y2I1 1504 aa11.91□□□□□ -0.5
ZEB1-209ENST00000542879 CCDC180Q9P1Z9 1646 aa11.19□□□□□ -0.62
ZEB1-209ENST00000542879 MYO15BQ96JP2 1530 aa10.57□□□□□ -0.72
ZEB1-209ENST00000542879 DCAF1Q9Y4B6 1507 aa10.45□□□□□ -0.74
ZEB1-209ENST00000542879 SHROOM4Q9ULL8 1493 aa10.22□□□□□ -0.77
ZEB1-209ENST00000542879 NACADO15069 1562 aa10.16□□□□□ -0.78
ZEB1-209ENST00000542879 ZCCHC6Q5VYS8 1495 aaKnown RBP10.09□□□□□ -0.79
ZEB1-209ENST00000542879 UNC13AQ9UPW8 1703 aa10.07□□□□□ -0.8
ZEB1-209ENST00000542879 RB1CC1Q8TDY2 1594 aa9.99□□□□□ -0.81
ZEB1-209ENST00000542879 BICRAQ9NZM4 1560 aa9.8□□□□□ -0.84
ZEB1-209ENST00000542879 PEG3Q9GZU2 1588 aa9.66□□□□□ -0.86
ZEB1-209ENST00000542879 ABCC9O60706 1549 aa9.55□□□□□ -0.88
ZEB1-209ENST00000542879 SUPT5HO00267 1087 aaKnown RBP9.54□□□□□ -0.88
ZEB1-209ENST00000542879 SMARCA2P51531 1590 aa9.5□□□□□ -0.89
ZEB1-209ENST00000542879 CHIC1Q5VXU3 224 aa9.45□□□□□ -0.9
ZEB1-209ENST00000542879 PRDM2Q13029 1718 aa9.45□□□□□ -0.9
ZEB1-209ENST00000542879 HRCP23327 699 aa9.43□□□□□ -0.9
ZEB1-209ENST00000542879 HMGXB3Q12766 1538 aa9.42□□□□□ -0.9
ZEB1-209ENST00000542879 SMARCA4P51532 1647 aa9.32□□□□□ -0.92
ZEB1-209ENST00000542879 EIF4G1Q04637 1599 aaKnown RBP9.32□□□□□ -0.92
ZEB1-209ENST00000542879 SCRIBQ14160 1630 aa9.28□□□□□ -0.92
ZEB1-209ENST00000542879 BAZ1AQ9NRL2 1556 aaPredicted RBP9.27□□□□□ -0.93
ZEB1-209ENST00000542879 PCGF6Q9BYE7 350 aa9.24□□□□□ -0.93
ZEB1-209ENST00000542879 NCAPD3P42695 1498 aa9.2□□□□□ -0.94
ZEB1-209ENST00000542879 CC2D2AQ9P2K1 1620 aa9.2□□□□□ -0.94
ZEB1-209ENST00000542879 DCAF8L2P0C7V8 631 aa9.17□□□□□ -0.94
ZEB1-209ENST00000542879 PPARGC1BQ86YN6 1023 aaKnown RBP9.17□□□□□ -0.94
ZEB1-209ENST00000542879 WDR97A6NE52 1622 aa9.13□□□□□ -0.95
ZEB1-209ENST00000542879 LOC105371045A0A1W2PR82 267 aa9.13□□□□□ -0.95
ZEB1-209ENST00000542879 TOP2AP11388 1531 aaKnown RBP9.09□□□□□ -0.95
ZEB1-209ENST00000542879 TRIM26Q12899 539 aaPredicted RBP9.08□□□□□ -0.96
ZEB1-209ENST00000542879 LAMC3Q9Y6N6 1575 aa9.07□□□□□ -0.96
ZEB1-209ENST00000542879 RSF1Q96T23 1441 aaPredicted RBP9.07□□□□□ -0.96
ZEB1-209ENST00000542879 ATAD2BQ9ULI0 1458 aa9.03□□□□□ -0.96
ZEB1-209ENST00000542879 PELP1Q8IZL8 1130 aaKnown RBP9.03□□□□□ -0.96
ZEB1-209ENST00000542879 THOC2Q8NI27 1593 aaKnown RBP9□□□□□ -0.97
ZEB1-209ENST00000542879 SCAF1Q9H7N4 1312 aaKnown RBP8.98□□□□□ -0.97
ZEB1-209ENST00000542879 MROH2BQ7Z745 1585 aa8.96□□□□□ -0.98
ZEB1-209ENST00000542879 ZEB1P37275 1124 aaPredicted RBP8.94□□□□□ -0.98
ZEB1-209ENST00000542879 WIZO95785 1651 aa8.91□□□□□ -0.98
ZEB1-209ENST00000542879 TRIM41Q8WV44 630 aa8.9□□□□□ -0.98
ZEB1-209ENST00000542879 WDR62O43379 1518 aa8.9□□□□□ -0.98
ZEB1-209ENST00000542879 BIVM-ERCC5R4GMW8 1640 aa8.88□□□□□ -0.99
ZEB1-209ENST00000542879 CECR2Q9BXF3 1484 aa8.86□□□□□ -0.99
ZEB1-209ENST00000542879 CUX2O14529 1486 aa8.85□□□□□ -0.99
ZEB1-209ENST00000542879 KIF21AQ7Z4S6 1674 aa8.84□□□□□ -0.99
ZEB1-209ENST00000542879 CFTRP13569 1480 aa8.83□□□□□ -1
ZEB1-209ENST00000542879 BAZ1BQ9UIG0 1483 aaKnown RBP8.81□□□□□ -1
ZEB1-209ENST00000542879 FAM9AQ8IZU1 332 aaPredicted RBP8.79□□□□□ -1
ZEB1-209ENST00000542879 ABCC8Q09428 1581 aa8.74□□□□□ -1.01
ZEB1-209ENST00000542879 TARBP1Q13395 1621 aaKnown RBP8.73□□□□□ -1.01
ZEB1-209ENST00000542879 WRNQ14191 1432 aaPredicted RBP eCLIP8.73□□□□□ -1.01
ZEB1-209ENST00000542879 DNMBPQ6XZF7 1577 aa8.72□□□□□ -1.01
ZEB1-209ENST00000542879 ABCA5Q8WWZ7 1642 aa8.68□□□□□ -1.02
ZEB1-209ENST00000542879 TOP2BQ02880 1626 aa8.67□□□□□ -1.02
ZEB1-209ENST00000542879 MYT1Q01538 1121 aa8.67□□□□□ -1.02
ZEB1-209ENST00000542879 EHMT2Q96KQ7 1210 aa8.67□□□□□ -1.02
ZEB1-209ENST00000542879 CCDC88BA6NC98 1476 aa8.66□□□□□ -1.02
ZEB1-209ENST00000542879 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.65□□□□□ -1.03
ZEB1-209ENST00000542879 MRC2Q9UBG0 1479 aa8.64□□□□□ -1.03
ZEB1-209ENST00000542879 CEP162Q5TB80 1403 aa8.64□□□□□ -1.03
ZEB1-209ENST00000542879 ACIN1Q9UKV3 1341 aaKnown RBP8.63□□□□□ -1.03
ZEB1-209ENST00000542879 PBRM1Q86U86 1689 aa8.62□□□□□ -1.03
ZEB1-209ENST00000542879 TNIKQ9UKE5 1360 aa8.62□□□□□ -1.03
ZEB1-209ENST00000542879 CCER1Q8TC90 406 aaPredicted RBP8.61□□□□□ -1.03
ZEB1-209ENST00000542879 EEA1Q15075 1411 aa8.6□□□□□ -1.03
ZEB1-209ENST00000542879 CADPSQ9ULU8 1353 aa8.6□□□□□ -1.03
ZEB1-209ENST00000542879 NEUROD1Q13562 356 aa8.6□□□□□ -1.03
ZEB1-209ENST00000542879 SOGA1O94964 1423 aa8.6□□□□□ -1.03
ZEB1-209ENST00000542879 SHROOM2Q13796 1616 aa8.59□□□□□ -1.03
ZEB1-209ENST00000542879 RUSC2Q8N2Y8 1516 aa8.57□□□□□ -1.04
ZEB1-209ENST00000542879 DIEXFQ68CQ4 756 aaKnown RBP8.56□□□□□ -1.04
ZEB1-209ENST00000542879 PDS5BQ9NTI5 1447 aa8.56□□□□□ -1.04
ZEB1-209ENST00000542879 DNAJC5BQ9UF47 199 aa8.55□□□□□ -1.04
ZEB1-209ENST00000542879 KIF21BO75037 1637 aa8.55□□□□□ -1.04
ZEB1-209ENST00000542879 PRKCSHP14314 528 aaPredicted RBP8.54□□□□□ -1.04
ZEB1-209ENST00000542879 GOLGA3Q08378 1498 aa8.54□□□□□ -1.04
ZEB1-209ENST00000542879 CUL7Q14999 1698 aa8.54□□□□□ -1.04
ZEB1-209ENST00000542879 URB2Q14146 1524 aaKnown RBP8.54□□□□□ -1.04
ZEB1-209ENST00000542879 CEP164Q9UPV0 1460 aa8.52□□□□□ -1.05
ZEB1-209ENST00000542879 ABCA10Q8WWZ4 1543 aa8.51□□□□□ -1.05
ZEB1-209ENST00000542879 CSRNP3Q8WYN3 585 aa8.51□□□□□ -1.05
ZEB1-209ENST00000542879 SYNJ1O43426 1573 aa8.51□□□□□ -1.05
ZEB1-209ENST00000542879 CENPBP07199 599 aaPredicted RBP8.5□□□□□ -1.05
ZEB1-209ENST00000542879 GTF3C3Q9Y5Q9 886 aa8.5□□□□□ -1.05
ZEB1-209ENST00000542879 IFT140Q96RY7 1462 aa8.5□□□□□ -1.05
ZEB1-209ENST00000542879 ERICH3Q5RHP9 1530 aa8.5□□□□□ -1.05
ZEB1-209ENST00000542879 TOPBP1Q92547 1522 aa8.5□□□□□ -1.05
ZEB1-209ENST00000542879 CLASP1Q7Z460 1538 aa8.5□□□□□ -1.05
ZEB1-209ENST00000542879 EIF4G3O43432 1585 aaKnown RBP8.5□□□□□ -1.05
ZEB1-209ENST00000542879 FANCD2Q9BXW9 1451 aa8.49□□□□□ -1.05
ZEB1-209ENST00000542879 CUX1P39880 1505 aa8.49□□□□□ -1.05
ZEB1-209ENST00000542879 NESP48681 1621 aa8.49□□□□□ -1.05
ZEB1-209ENST00000542879 TTBK1Q5TCY1 1321 aaPredicted RBP8.49□□□□□ -1.05
ZEB1-209ENST00000542879 ZNF316A6NFI3 1004 aaPredicted RBP8.48□□□□□ -1.05
ZEB1-209ENST00000542879 PABPN1Q86U42 306 aaKnown RBP eCLIP8.47□□□□□ -1.05
ZEB1-209ENST00000542879 ADAMTS12P58397 1594 aa8.47□□□□□ -1.05
ZEB1-209ENST00000542879 APLP2Q06481 763 aa8.46□□□□□ -1.05
ZEB1-209ENST00000542879 VPS8Q8N3P4 1428 aa8.44□□□□□ -1.06
ZEB1-209ENST00000542879 UBTFP17480 764 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms