RNA–Protein interactions for RNA: ENST00000463244.6

CPSF7-209, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-209ENST00000463244 NISCHQ9Y2I1 1504 aa52.54■■■■■ 6
CPSF7-209ENST00000463244 ABCC9O60706 1549 aa47.48■■■■■ 5.19
CPSF7-209ENST00000463244 CCDC180Q9P1Z9 1646 aa47.28■■■■■ 5.16
CPSF7-209ENST00000463244 RB1CC1Q8TDY2 1594 aa45.11■■■■■ 4.81
CPSF7-209ENST00000463244 DNAJC5BQ9UF47 199 aa44.78■■■■■ 4.76
CPSF7-209ENST00000463244 NACADO15069 1562 aa44.75■■■■■ 4.75
CPSF7-209ENST00000463244 DCAF8L2P0C7V8 631 aa44.37■■■■■ 4.69
CPSF7-209ENST00000463244 PABPN1Q86U42 306 aaKnown RBP eCLIP44.14■■■■■ 4.66
CPSF7-209ENST00000463244 UNC13AQ9UPW8 1703 aa44.13■■■■■ 4.65
CPSF7-209ENST00000463244 MYO15BQ96JP2 1530 aa44.07■■■■■ 4.65
CPSF7-209ENST00000463244 BICRAQ9NZM4 1560 aa43.83■■■■■ 4.61
CPSF7-209ENST00000463244 ZCCHC6Q5VYS8 1495 aaKnown RBP43.51■■■■■ 4.56
CPSF7-209ENST00000463244 DCAF1Q9Y4B6 1507 aa43.41■■■■■ 4.54
CPSF7-209ENST00000463244 SHROOM4Q9ULL8 1493 aa43.22■■■■■ 4.51
CPSF7-209ENST00000463244 SCRIBQ14160 1630 aa43.03■■■■■ 4.48
CPSF7-209ENST00000463244 CC2D2AQ9P2K1 1620 aa42.91■■■■■ 4.46
CPSF7-209ENST00000463244 CECR2Q9BXF3 1484 aa42.81■■■■■ 4.44
CPSF7-209ENST00000463244 EIF4G1Q04637 1599 aaKnown RBP42.77■■■■■ 4.44
CPSF7-209ENST00000463244 NCAPD3P42695 1498 aa41.32■■■■■ 4.2
CPSF7-209ENST00000463244 DNAJC5Q9H3Z4 198 aa41.31■■■■■ 4.2
CPSF7-209ENST00000463244 ATAD2BQ9ULI0 1458 aa41.15■■■■■ 4.18
CPSF7-209ENST00000463244 CUX2O14529 1486 aa41.06■■■■■ 4.16
CPSF7-209ENST00000463244 SMARCA4P51532 1647 aa41.05■■■■■ 4.16
CPSF7-209ENST00000463244 SMARCA2P51531 1590 aa41.03■■■■■ 4.16
CPSF7-209ENST00000463244 ERCC6Q03468 1493 aa41.02■■■■■ 4.16
CPSF7-209ENST00000463244 HMGXB3Q12766 1538 aa41■■■■■ 4.15
CPSF7-209ENST00000463244 BAZ1AQ9NRL2 1556 aaPredicted RBP40.8■■■■■ 4.12
CPSF7-209ENST00000463244 NESP48681 1621 aa40.73■■■■■ 4.11
CPSF7-209ENST00000463244 BAZ1BQ9UIG0 1483 aaKnown RBP40.72■■■■■ 4.11
CPSF7-209ENST00000463244 PEG3Q9GZU2 1588 aa40.68■■■■■ 4.1
CPSF7-209ENST00000463244 MROH2BQ7Z745 1585 aa40.47■■■■■ 4.07
CPSF7-209ENST00000463244 LAMC3Q9Y6N6 1575 aa40.43■■■■■ 4.06
CPSF7-209ENST00000463244 THOC2Q8NI27 1593 aaKnown RBP40.4■■■■■ 4.06
CPSF7-209ENST00000463244 KIF21AQ7Z4S6 1674 aa40.23■■■■■ 4.03
CPSF7-209ENST00000463244 PDS5BQ9NTI5 1447 aa40.18■■■■■ 4.02
CPSF7-209ENST00000463244 CADPSQ9ULU8 1353 aa40.03■■■■■ 4
CPSF7-209ENST00000463244 WIZO95785 1651 aa39.98■■■■□ 3.99
CPSF7-209ENST00000463244 MRC2Q9UBG0 1479 aa39.86■■■■□ 3.97
CPSF7-209ENST00000463244 WDR62O43379 1518 aa39.8■■■■□ 3.96
CPSF7-209ENST00000463244 CEP164Q9UPV0 1460 aa39.64■■■■□ 3.94
CPSF7-209ENST00000463244 FANCD2Q9BXW9 1451 aa39.57■■■■□ 3.93
CPSF7-209ENST00000463244 RSF1Q96T23 1441 aaPredicted RBP39.54■■■■□ 3.92
CPSF7-209ENST00000463244 CFTRP13569 1480 aa39.54■■■■□ 3.92
CPSF7-209ENST00000463244 TOP2AP11388 1531 aaKnown RBP39.46■■■■□ 3.91
CPSF7-209ENST00000463244 TRIM41Q8WV44 630 aa39.35■■■■□ 3.89
CPSF7-209ENST00000463244 URB2Q14146 1524 aaKnown RBP39.28■■■■□ 3.88
CPSF7-209ENST00000463244 PRDM2Q13029 1718 aa39.15■■■■□ 3.86
CPSF7-209ENST00000463244 OSCARQ8IYS5 282 aa39.1■■■■□ 3.85
CPSF7-209ENST00000463244 CCDC88BA6NC98 1476 aa39■■■■□ 3.83
CPSF7-209ENST00000463244 IFT140Q96RY7 1462 aa38.86■■■■□ 3.81
CPSF7-209ENST00000463244 ZNF608Q9ULD9 1512 aaPredicted RBP38.83■■■■□ 3.81
CPSF7-209ENST00000463244 TOPBP1Q92547 1522 aa38.81■■■■□ 3.8
CPSF7-209ENST00000463244 ABCC8Q09428 1581 aa38.7■■■■□ 3.79
CPSF7-209ENST00000463244 RIMBP3CA6NJZ7 1639 aa38.66■■■■□ 3.78
CPSF7-209ENST00000463244 RIMBP3BA6NNM3 1639 aa38.66■■■■□ 3.78
CPSF7-209ENST00000463244 RIMBP3Q9UFD9 1639 aa38.66■■■■□ 3.78
CPSF7-209ENST00000463244 DNMBPQ6XZF7 1577 aa38.65■■■■□ 3.78
CPSF7-209ENST00000463244 EIF4G3O43432 1585 aaKnown RBP38.61■■■■□ 3.77
CPSF7-209ENST00000463244 ARHGEF11O15085 1522 aa38.52■■■■□ 3.76
CPSF7-209ENST00000463244 TARBP1Q13395 1621 aaKnown RBP38.5■■■■□ 3.75
CPSF7-209ENST00000463244 AQRO60306 1485 aaKnown RBP eCLIP38.43■■■■□ 3.741e-7■■■■■ 27.7
CPSF7-209ENST00000463244 POLA1P09884 1462 aaPredicted RBP38.4■■■■□ 3.74
CPSF7-209ENST00000463244 CHD1O14646 1710 aa38.38■■■■□ 3.74
CPSF7-209ENST00000463244 RAD54L2Q9Y4B4 1467 aa38.24■■■■□ 3.71
CPSF7-209ENST00000463244 CYB5RLQ6IPT4 315 aa38.2■■■■□ 3.71
CPSF7-209ENST00000463244 FBLN2P98095 1184 aa38.19■■■■□ 3.7
CPSF7-209ENST00000463244 SOGA1O94964 1423 aa38.19■■■■□ 3.7
CPSF7-209ENST00000463244 TDRD9Q8NDG6 1382 aaKnown RBP38.15■■■■□ 3.7
CPSF7-209ENST00000463244 FGD5Q6ZNL6 1462 aa38.11■■■■□ 3.69
CPSF7-209ENST00000463244 ARAP1Q96P48 1450 aa38.11■■■■□ 3.69
CPSF7-209ENST00000463244 WDR97A6NE52 1622 aa38.1■■■■□ 3.69
CPSF7-209ENST00000463244 CUX1P39880 1505 aa38.05■■■■□ 3.68
CPSF7-209ENST00000463244 SNAPC4Q5SXM2 1469 aa38.04■■■■□ 3.68
CPSF7-209ENST00000463244 CLASP1Q7Z460 1538 aa37.94■■■■□ 3.66
CPSF7-209ENST00000463244 MAGI1Q96QZ7 1491 aaPredicted RBP37.94■■■■□ 3.66
CPSF7-209ENST00000463244 GRIN2BQ13224 1484 aa37.9■■■■□ 3.66
CPSF7-209ENST00000463244 CHMP7Q8WUX9 453 aaPredicted RBP37.89■■■■□ 3.66
CPSF7-209ENST00000463244 SYNJ1O43426 1573 aa37.88■■■■□ 3.65
CPSF7-209ENST00000463244 TRHP20396 242 aaPredicted RBP37.84■■■■□ 3.65
CPSF7-209ENST00000463244 SYNJ2O15056 1496 aa37.82■■■■□ 3.64
CPSF7-209ENST00000463244 PBRM1Q86U86 1689 aa37.76■■■■□ 3.64
CPSF7-209ENST00000463244 GAPVD1Q14C86 1478 aa37.74■■■■□ 3.63
CPSF7-209ENST00000463244 ABCA10Q8WWZ4 1543 aa37.68■■■■□ 3.62
CPSF7-209ENST00000463244 ABCA5Q8WWZ7 1642 aa37.66■■■■□ 3.62
CPSF7-209ENST00000463244 SUPT5HO00267 1087 aaKnown RBP37.53■■■■□ 3.6
CPSF7-209ENST00000463244 WRNQ14191 1432 aaPredicted RBP eCLIP37.45■■■■□ 3.59
CPSF7-209ENST00000463244 GRIN2AQ12879 1464 aa37.43■■■■□ 3.58
CPSF7-209ENST00000463244 BIVM-ERCC5R4GMW8 1640 aa37.39■■■■□ 3.58
CPSF7-209ENST00000463244 ADAMTS12P58397 1594 aa37.38■■■■□ 3.58
CPSF7-209ENST00000463244 TOP2BQ02880 1626 aa37.37■■■■□ 3.57
CPSF7-209ENST00000463244 NUP160Q12769 1436 aa37.32■■■■□ 3.56
CPSF7-209ENST00000463244 ERCC6L2Q5T890 1561 aa37.32■■■■□ 3.56
CPSF7-209ENST00000463244 CEP170Q5SW79 1584 aa37.31■■■■□ 3.56
CPSF7-209ENST00000463244 FHAD1B1AJZ9 1412 aa37.25■■■■□ 3.55
CPSF7-209ENST00000463244 ERICH3Q5RHP9 1530 aa37.2■■■■□ 3.55
CPSF7-209ENST00000463244 SHROOM2Q13796 1616 aa37.2■■■■□ 3.55
CPSF7-209ENST00000463244 PRG4Q92954 1404 aaPredicted RBP36.95■■■■□ 3.51
CPSF7-209ENST00000463244 AEBP2Q6ZN18 517 aaPredicted RBP36.92■■■■□ 3.5
CPSF7-209ENST00000463244 JPH4Q96JJ6 628 aa36.9■■■■□ 3.5
CPSF7-209ENST00000463244 RUSC2Q8N2Y8 1516 aa36.87■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms