Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.58■□□□□ 0.882e-8■■■□□ 16.4
UPF1Q92900 ATXN2L-213ENST00000564162 770 ntTSL 526.4■■□□□ 1.829e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-221ENST00000566946 2162 ntTSL 1 (best)23.47■■□□□ 1.359e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-208ENST00000562583 1933 ntTSL 1 (best)22.78■■□□□ 1.249e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.079e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-211ENST00000563314 4574 ntTSL 514.46□□□□□ -0.099e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-218ENST00000565971 3264 ntTSL 1 (best)14.05□□□□□ -0.169e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.219e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.339e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.369e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.389e-17■■■□□ 16.4
UPF1Q92900 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.419e-17■■■□□ 16.4
UPF1Q92900 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.611e-6■■■□□ 16.4
UPF1Q92900 STK25-205ENST00000405883 1904 ntTSL 2 BASIC25.88■■□□□ 1.731e-6■■■□□ 16.4
UPF1Q92900 STK25-230ENST00000494699 797 ntTSL 225.84■■□□□ 1.731e-6■■■□□ 16.4
UPF1Q92900 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.51■■□□□ 1.031e-6■■■□□ 16.4
UPF1Q92900 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.781e-6■■■□□ 16.4
UPF1Q92900 STK25-228ENST00000487962 2024 ntTSL 219.34■□□□□ 0.691e-6■■■□□ 16.4
UPF1Q92900 STK25-235ENST00000543554 2556 ntTSL 2 BASIC17.63■□□□□ 0.411e-6■■■□□ 16.4
UPF1Q92900 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.411e-6■■■□□ 16.4
UPF1Q92900 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.936e-8■■■□□ 16.4
UPF1Q92900 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC24.05■■□□□ 1.446e-8■■■□□ 16.4
UPF1Q92900 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.07■□□□□ 0.969e-10■■■□□ 16.4
UPF1Q92900 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC18.32■□□□□ 0.522e-9■■■□□ 16.4
UPF1Q92900 MRPS34-203ENST00000569585 713 ntTSL 218.1■□□□□ 0.496e-8■■■□□ 16.4
UPF1Q92900 TRIM25-205ENST00000572021 1555 ntTSL 1 (best)16.13■□□□□ 0.176e-8■■■□□ 16.4
UPF1Q92900 TMCO1-202ENST00000392129 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.129e-10■■■□□ 16.4
UPF1Q92900 TMCO1-201ENST00000367881 2224 ntTSL 1 (best) BASIC12.73□□□□□ -0.379e-10■■■□□ 16.4
UPF1Q92900 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC8.6□□□□□ -1.039e-10■■■□□ 16.4
UPF1Q92900 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.725e-6■■■□□ 16.4
UPF1Q92900 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.475e-6■■■□□ 16.4
UPF1Q92900 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC16.32■□□□□ 0.25e-6■■■□□ 16.4
UPF1Q92900 RNASEH1-202ENST00000436842 2120 ntTSL 223.38■■□□□ 1.334e-6■■■□□ 16.4
UPF1Q92900 C19orf25-212ENST00000592605 357 ntTSL 325.81■■□□□ 1.724e-11■■■□□ 16.4
UPF1Q92900 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC24.23■■□□□ 1.474e-11■■■□□ 16.4
UPF1Q92900 C19orf25-208ENST00000589421 492 ntTSL 223.17■■□□□ 1.34e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-205ENST00000593609 576 ntTSL 224.31■■□□□ 1.484e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-218ENST00000599589 2636 ntTSL 1 (best)19.58■□□□□ 0.724e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.86■□□□□ 0.294e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-213ENST00000595897 2973 ntTSL 1 (best)16.7■□□□□ 0.264e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.074e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.034e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.45□□□□□ -0.14e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.194e-11■■■□□ 16.4
UPF1Q92900 ARHGEF1-220ENST00000600274 3439 ntTSL 1 (best)12.02□□□□□ -0.484e-11■■■□□ 16.4
UPF1Q92900 RNPEPL1-202ENST00000437406 1576 ntTSL 220.32■□□□□ 0.842e-6■■■□□ 16.4
UPF1Q92900 RNPEPL1-208ENST00000486058 3126 ntTSL 216.52■□□□□ 0.242e-6■■■□□ 16.4
UPF1Q92900 RNPEPL1-207ENST00000481757 3944 ntTSL 212.45□□□□□ -0.422e-6■■■□□ 16.4
UPF1Q92900 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC27.1■■□□□ 1.932e-7■■■□□ 16.4
UPF1Q92900 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC25.37■■□□□ 1.652e-7■■■□□ 16.4
UPF1Q92900 TBC1D22A-204ENST00000394449 2048 ntTSL 522.89■■□□□ 1.262e-7■■■□□ 16.4
UPF1Q92900 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.862e-7■■■□□ 16.4
UPF1Q92900 DENND4B-208ENST00000480340 2530 ntTSL 217.17■□□□□ 0.342e-7■■■□□ 16.4
UPF1Q92900 OAZ2-205ENST00000559753 785 ntTSL 2 BASIC16.3■□□□□ 0.22e-7■■■□□ 16.4
UPF1Q92900 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.15■□□□□ 0.182e-7■■■□□ 16.4
UPF1Q92900 TBC1D22A-207ENST00000441162 2636 ntTSL 215.88■□□□□ 0.132e-7■■■□□ 16.4
UPF1Q92900 CD320-202ENST00000537716 1119 ntTSL 2 BASIC27.03■■□□□ 1.928e-7■■■□□ 16.4
UPF1Q92900 CD320-203ENST00000596002 1729 ntTSL 1 (best)25.19■■□□□ 1.628e-7■■■□□ 16.4
UPF1Q92900 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.498e-7■■■□□ 16.4
UPF1Q92900 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.584e-7■■■□□ 16.4
UPF1Q92900 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.254e-7■■■□□ 16.4
UPF1Q92900 NADK-204ENST00000378625 3653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.594e-7■■■□□ 16.4
UPF1Q92900 TNRC6C-AS1-202ENST00000592939 2938 nt16.45■□□□□ 0.222e-6■■■□□ 16.3
UPF1Q92900 DAPP1-201ENST00000296414 2955 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.67e-6■■■□□ 16.3
UPF1Q92900 DAPP1-204ENST00000514301 2748 ntTSL 1 (best)5.7□□□□□ -1.57e-6■■■□□ 16.3
UPF1Q92900 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.69□□□□□ -0.222e-6■■■□□ 16.3
UPF1Q92900 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.139e-8■■■□□ 16.3
UPF1Q92900 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC11.67□□□□□ -0.549e-8■■■□□ 16.3
UPF1Q92900 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.231e-6■■■□□ 16.3
UPF1Q92900 ESPN-204ENST00000434576 750 ntTSL 321.94■■□□□ 1.11e-7■■■□□ 16.3
UPF1Q92900 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.9■□□□□ 0.461e-7■■■□□ 16.3
UPF1Q92900 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.411e-7■■■□□ 16.3
UPF1Q92900 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.013e-7■■■□□ 16.3
UPF1Q92900 PQLC2-206ENST00000497827 1428 ntTSL 526.82■■□□□ 1.889e-9■■■□□ 16.3
UPF1Q92900 SLC12A4-203ENST00000537830 3525 ntTSL 2 BASIC12.74□□□□□ -0.378e-9■■■□□ 16.3
UPF1Q92900 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.127e-8■■■□□ 16.3
UPF1Q92900 UBE2Z-207ENST00000513342 4250 ntTSL 28.17□□□□□ -1.17e-8■■■□□ 16.3
UPF1Q92900 AES-209ENST00000587393 1082 ntTSL 220.64■□□□□ 0.892e-18■■■□□ 16.3
UPF1Q92900 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC18.28■□□□□ 0.523e-7■■■□□ 16.3
UPF1Q92900 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.333e-7■■■□□ 16.3
UPF1Q92900 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.22■□□□□ 0.193e-6■■■□□ 16.3
UPF1Q92900 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC18.75■□□□□ 0.594e-7■■■□□ 16.3
UPF1Q92900 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.394e-7■■■□□ 16.3
UPF1Q92900 CCDC32-214ENST00000561011 1577 ntTSL 2 BASIC16.83■□□□□ 0.284e-7■■■□□ 16.3
UPF1Q92900 CCDC32-208ENST00000559153 1918 ntTSL 1 (best)16.25■□□□□ 0.194e-7■■■□□ 16.3
UPF1Q92900 CCDC32-212ENST00000560305 557 ntTSL 4 BASIC14.03□□□□□ -0.164e-7■■■□□ 16.3
UPF1Q92900 CCDC32-202ENST00000416810 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.384e-7■■■□□ 16.3
UPF1Q92900 CCDC32-203ENST00000558113 576 ntTSL 3 BASIC11.48□□□□□ -0.574e-7■■■□□ 16.3
UPF1Q92900 CCDC32-210ENST00000559911 677 ntTSL 5 BASIC11.48□□□□□ -0.574e-7■■■□□ 16.3
UPF1Q92900 CCDC32-209ENST00000559291 6131 ntTSL 59.9□□□□□ -0.824e-7■■■□□ 16.3
UPF1Q92900 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.12e-8■■■□□ 16.2
UPF1Q92900 LDB1-204ENST00000490751 762 ntTSL 244.89■■■■■ 4.784e-16■■■□□ 16.2
UPF1Q92900 SLC6A6-206ENST00000615188 689 ntTSL 325■■□□□ 1.592e-6■■■□□ 16.2
UPF1Q92900 SLC6A6-209ENST00000622176 1116 ntTSL 1 (best)23.51■■□□□ 1.352e-6■■■□□ 16.2
UPF1Q92900 SLC6A6-203ENST00000610642 1983 ntTSL 223.18■■□□□ 1.32e-6■■■□□ 16.2
UPF1Q92900 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.492e-6■■■□□ 16.2
UPF1Q92900 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC11.98□□□□□ -0.492e-6■■■□□ 16.2
UPF1Q92900 SLC6A6-207ENST00000618278 6401 ntTSL 511.01□□□□□ -0.652e-6■■■□□ 16.2
UPF1Q92900 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.312e-6■■■□□ 16.2
UPF1Q92900 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.073e-7■■■□□ 16.2
Retrieved 100 of 15,879 protein–RNA pairs in 99.3 ms