Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 FAM207BP-201ENST00000447172 505 ntBASIC18.64■□□□□ 0.57
CCNFP41002 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCNFP41002 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.64■□□□□ 0.57
CCNFP41002 PRSS44-201ENST00000515154 1146 ntBASIC18.64■□□□□ 0.57
CCNFP41002 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.64■□□□□ 0.57
CCNFP41002 AC066615.1-201ENST00000640911 628 ntBASIC18.64■□□□□ 0.57
CCNFP41002 MYC-208ENST00000641036 567 ntBASIC18.64■□□□□ 0.57
CCNFP41002 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CCNFP41002 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.64■□□□□ 0.57
CCNFP41002 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 AC093677.2-201ENST00000600169 1863 ntBASIC18.64■□□□□ 0.57
CCNFP41002 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.64■□□□□ 0.57
CCNFP41002 KRT8P11-201ENST00000409686 1436 ntBASIC18.64■□□□□ 0.57
CCNFP41002 AC112777.1-201ENST00000540175 1423 ntBASIC18.64■□□□□ 0.57
CCNFP41002 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CCNFP41002 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCNFP41002 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
CCNFP41002 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.63■□□□□ 0.57
CCNFP41002 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
CCNFP41002 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.63■□□□□ 0.57
CCNFP41002 MESTP1-201ENST00000404287 994 ntBASIC18.63■□□□□ 0.57
CCNFP41002 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 AC011506.1-201ENST00000474329 610 ntBASIC18.63■□□□□ 0.57
CCNFP41002 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 AC093827.2-201ENST00000512654 315 ntBASIC18.63■□□□□ 0.57
CCNFP41002 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.63■□□□□ 0.57
CCNFP41002 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CCNFP41002 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.63■□□□□ 0.57
CCNFP41002 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.63■□□□□ 0.57
CCNFP41002 KRT8P3-201ENST00000519669 1449 ntBASIC18.63■□□□□ 0.57
CCNFP41002 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.63■□□□□ 0.57
CCNFP41002 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.63■□□□□ 0.57
CCNFP41002 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.63■□□□□ 0.57
CCNFP41002 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCNFP41002 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCNFP41002 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CCNFP41002 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCNFP41002 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCNFP41002 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
CCNFP41002 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CCNFP41002 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CCNFP41002 SNORA78-201ENST00000459373 127 ntBASIC18.62■□□□□ 0.57
CCNFP41002 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.62■□□□□ 0.57
CCNFP41002 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCNFP41002 AP003071.4-201ENST00000562276 1284 ntBASIC18.62■□□□□ 0.57
CCNFP41002 MIR4497-201ENST00000583208 89 ntBASIC18.62■□□□□ 0.57
CCNFP41002 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
CCNFP41002 REXO1L10P-201ENST00000615707 1290 ntBASIC18.62■□□□□ 0.57
CCNFP41002 REXO1L12P-201ENST00000622156 912 ntBASIC18.62■□□□□ 0.57
CCNFP41002 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.62■□□□□ 0.57
CCNFP41002 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.62■□□□□ 0.57
CCNFP41002 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CCNFP41002 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.62■□□□□ 0.57
CCNFP41002 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNFP41002 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.61■□□□□ 0.57
CCNFP41002 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.61■□□□□ 0.57
CCNFP41002 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCNFP41002 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCNFP41002 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms