Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.55■□□□□ 0.4
COL21A1Q96P44 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.55■□□□□ 0.4
COL21A1Q96P44 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL21A1Q96P44 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.55■□□□□ 0.4
COL21A1Q96P44 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.55■□□□□ 0.4
COL21A1Q96P44 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.55■□□□□ 0.4
COL21A1Q96P44 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.55■□□□□ 0.4
COL21A1Q96P44 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 MIR1238-201ENST00000408483 83 ntBASIC17.54■□□□□ 0.4
COL21A1Q96P44 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL21A1Q96P44 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.54■□□□□ 0.4
COL21A1Q96P44 AP000997.3-201ENST00000623333 2250 ntBASIC17.54■□□□□ 0.4
COL21A1Q96P44 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 FITM1-202ENST00000559294 800 ntBASIC17.53■□□□□ 0.4
COL21A1Q96P44 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.53■□□□□ 0.4
COL21A1Q96P44 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL21A1Q96P44 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.52■□□□□ 0.4
COL21A1Q96P44 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.52■□□□□ 0.4
COL21A1Q96P44 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL21A1Q96P44 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.52■□□□□ 0.39
COL21A1Q96P44 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
COL21A1Q96P44 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
COL21A1Q96P44 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL21A1Q96P44 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms