Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 BCL2-203ENST00000589955 5011 ntBASIC14.16□□□□□ -0.14
HLA-DMBP28068 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 AC068880.1-201ENST00000507289 2297 ntBASIC14.16□□□□□ -0.14
HLA-DMBP28068 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 AL135905.2-201ENST00000584934 1404 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 KRT8P32-201ENST00000512863 1461 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 RPS2P55-201ENST00000397318 883 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 AC012618.2-201ENST00000428058 849 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 SNORA78-201ENST00000459373 127 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 AC008040.2-201ENST00000461049 708 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 AC107956.1-201ENST00000494359 873 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 GLRB-205ENST00000512619 728 ntTSL 3 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 AP001412.1-201ENST00000608405 714 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 CR392000.1-201ENST00000624770 1228 ntBASIC14.15□□□□□ -0.14
HLA-DMBP28068 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HLA-DMBP28068 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.15□□□□□ -0.14
HLA-DMBP28068 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.15
HLA-DMBP28068 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.15
HLA-DMBP28068 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
HLA-DMBP28068 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 AL357033.4-201ENST00000617703 1807 ntBASIC14.14□□□□□ -0.15
HLA-DMBP28068 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 MDFI-202ENST00000373050 809 ntTSL 2 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 PPP1R14BP5-201ENST00000440334 435 ntBASIC14.14□□□□□ -0.15
HLA-DMBP28068 FDX2-207ENST00000494368 584 ntTSL 4 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HLA-DMBP28068 MIR4497-201ENST00000583208 89 ntBASIC14.14□□□□□ -0.15
HLA-DMBP28068 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DMBP28068 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms