Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AC097488.1-201ENST00000507834 756 ntBASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ANO7L1-203ENST00000602586 1720 ntBASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 RBM17P1-201ENST00000453646 1190 ntBASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 NAPSB-206ENST00000562112 1266 ntBASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CKBP1-201ENST00000565489 1086 ntBASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 LINC01238-205ENST00000567549 1107 ntBASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AL133373.2-201ENST00000623187 2828 ntBASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 MFAP1P1-201ENST00000442257 1255 ntBASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AC116562.2-201ENST00000507042 360 ntBASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 IRF5-214ENST00000613821 595 ntTSL 5 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC25.01■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC25.01■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 MIR1238-201ENST00000408483 83 ntBASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 FSCN1P1-201ENST00000568912 1481 ntBASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms