RNA–Protein interactions for RNA: ENST00000348987.4

SCARF1-202, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARF1, Length 2,619 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-202ENST00000348987 NISCHQ9Y2I1 1504 aa37.59■■■■□ 3.61
SCARF1-202ENST00000348987 SHROOM4Q9ULL8 1493 aa32.34■■■□□ 2.77
SCARF1-202ENST00000348987 CCDC180Q9P1Z9 1646 aa32.05■■■□□ 2.72
SCARF1-202ENST00000348987 ZCCHC6Q5VYS8 1495 aaKnown RBP31.79■■■□□ 2.68
SCARF1-202ENST00000348987 SUPT5HO00267 1087 aaKnown RBP31.73■■■□□ 2.67
SCARF1-202ENST00000348987 DCAF8L2P0C7V8 631 aa31.73■■■□□ 2.67
SCARF1-202ENST00000348987 HRCP23327 699 aa31.44■■■□□ 2.62
SCARF1-202ENST00000348987 PCGF6Q9BYE7 350 aa30.85■■■□□ 2.53
SCARF1-202ENST00000348987 PPARGC1BQ86YN6 1023 aaKnown RBP30.85■■■□□ 2.53
SCARF1-202ENST00000348987 CHIC1Q5VXU3 224 aa30.8■■■□□ 2.52
SCARF1-202ENST00000348987 MYO15BQ96JP2 1530 aa30.75■■■□□ 2.51
SCARF1-202ENST00000348987 DCAF1Q9Y4B6 1507 aa30.7■■■□□ 2.51
SCARF1-202ENST00000348987 ABCC9O60706 1549 aa30.32■■■□□ 2.44
SCARF1-202ENST00000348987 PELP1Q8IZL8 1130 aaKnown RBP30.21■■■□□ 2.43
SCARF1-202ENST00000348987 SCRIBQ14160 1630 aa30.18■■■□□ 2.42
SCARF1-202ENST00000348987 LOC105371045A0A1W2PR82 267 aa30.01■■■□□ 2.39
SCARF1-202ENST00000348987 RSF1Q96T23 1441 aaPredicted RBP29.85■■■□□ 2.37
SCARF1-202ENST00000348987 TRIM26Q12899 539 aaPredicted RBP29.82■■■□□ 2.36
SCARF1-202ENST00000348987 NACADO15069 1562 aa29.77■■■□□ 2.36
SCARF1-202ENST00000348987 SCAF1Q9H7N4 1312 aaKnown RBP29.75■■■□□ 2.35
SCARF1-202ENST00000348987 ZEB1P37275 1124 aaPredicted RBP29.54■■■□□ 2.32
SCARF1-202ENST00000348987 RB1CC1Q8TDY2 1594 aa29.53■■■□□ 2.32
SCARF1-202ENST00000348987 CECR2Q9BXF3 1484 aa29.53■■■□□ 2.32
SCARF1-202ENST00000348987 TRIM41Q8WV44 630 aa29.45■■■□□ 2.31
SCARF1-202ENST00000348987 FAM9AQ8IZU1 332 aaPredicted RBP29.35■■■□□ 2.29
SCARF1-202ENST00000348987 MROH2BQ7Z745 1585 aa29.32■■■□□ 2.28
SCARF1-202ENST00000348987 EHMT2Q96KQ7 1210 aa29.2■■■□□ 2.27
SCARF1-202ENST00000348987 WIZO95785 1651 aa29.13■■■□□ 2.25
SCARF1-202ENST00000348987 PABPN1Q86U42 306 aaKnown RBP eCLIP29.04■■■□□ 2.24
SCARF1-202ENST00000348987 UNC13AQ9UPW8 1703 aa29.02■■■□□ 2.24
SCARF1-202ENST00000348987 ACIN1Q9UKV3 1341 aaKnown RBP29.02■■■□□ 2.24
SCARF1-202ENST00000348987 MYT1Q01538 1121 aa28.99■■■□□ 2.23
SCARF1-202ENST00000348987 NEUROD1Q13562 356 aa28.96■■■□□ 2.23
SCARF1-202ENST00000348987 BAZ1AQ9NRL2 1556 aaPredicted RBP28.86■■■□□ 2.21
SCARF1-202ENST00000348987 GTF3C3Q9Y5Q9 886 aa28.8■■■□□ 2.2
SCARF1-202ENST00000348987 SMARCA4P51532 1647 aa28.71■■■□□ 2.19
SCARF1-202ENST00000348987 EIF4G1Q04637 1599 aaKnown RBP28.68■■■□□ 2.18
SCARF1-202ENST00000348987 BICRAQ9NZM4 1560 aa28.68■■■□□ 2.18
SCARF1-202ENST00000348987 CENPBP07199 599 aaPredicted RBP28.62■■■□□ 2.17
SCARF1-202ENST00000348987 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.61■■■□□ 2.17
SCARF1-202ENST00000348987 TOP2AP11388 1531 aaKnown RBP28.57■■■□□ 2.16
SCARF1-202ENST00000348987 CCDC88BA6NC98 1476 aa28.56■■■□□ 2.16
SCARF1-202ENST00000348987 ABCC8Q09428 1581 aa28.56■■■□□ 2.16
SCARF1-202ENST00000348987 DIEXFQ68CQ4 756 aaKnown RBP28.55■■■□□ 2.16
SCARF1-202ENST00000348987 CCER1Q8TC90 406 aaPredicted RBP28.53■■■□□ 2.16
SCARF1-202ENST00000348987 SMARCA2P51531 1590 aa28.47■■■□□ 2.15
SCARF1-202ENST00000348987 SOGA1O94964 1423 aa28.34■■■□□ 2.13
SCARF1-202ENST00000348987 TTBK1Q5TCY1 1321 aaPredicted RBP28.24■■■□□ 2.11
SCARF1-202ENST00000348987 RUSC2Q8N2Y8 1516 aa28.22■■■□□ 2.11
SCARF1-202ENST00000348987 CEP162Q5TB80 1403 aa28.16■■■□□ 2.1
SCARF1-202ENST00000348987 CSRNP3Q8WYN3 585 aa28.12■■■□□ 2.09
SCARF1-202ENST00000348987 YTHDC1Q96MU7 727 aaKnown RBP28.11■■■□□ 2.09
SCARF1-202ENST00000348987 ATAD2BQ9ULI0 1458 aa28.11■■■□□ 2.09
SCARF1-202ENST00000348987 PEG3Q9GZU2 1588 aa28.09■■■□□ 2.09
SCARF1-202ENST00000348987 UBTFP17480 764 aaKnown RBP28.07■■■□□ 2.08
SCARF1-202ENST00000348987 TNIKQ9UKE5 1360 aa28.05■■■□□ 2.08
SCARF1-202ENST00000348987 WRNQ14191 1432 aaPredicted RBP eCLIP28.05■■■□□ 2.08
SCARF1-202ENST00000348987 BAZ1BQ9UIG0 1483 aaKnown RBP28.02■■■□□ 2.08
SCARF1-202ENST00000348987 ZNF316A6NFI3 1004 aaPredicted RBP27.99■■■□□ 2.07
SCARF1-202ENST00000348987 EEA1Q15075 1411 aa27.97■■■□□ 2.07
SCARF1-202ENST00000348987 SYNJ1O43426 1573 aa27.87■■■□□ 2.05
SCARF1-202ENST00000348987 GOLGA3Q08378 1498 aa27.86■■■□□ 2.05
SCARF1-202ENST00000348987 MIER1Q8N108 512 aa27.84■■■□□ 2.05
SCARF1-202ENST00000348987 CEP164Q9UPV0 1460 aa27.69■■■□□ 2.02
SCARF1-202ENST00000348987 RANGAP1P46060 587 aaPredicted RBP27.64■■■□□ 2.02
SCARF1-202ENST00000348987 CLIP1P30622 1438 aa27.61■■■□□ 2.01
SCARF1-202ENST00000348987 RAPGEF2Q9Y4G8 1499 aa27.61■■■□□ 2.01
SCARF1-202ENST00000348987 KIF21BO75037 1637 aa27.6■■■□□ 2.01
SCARF1-202ENST00000348987 NCAPD3P42695 1498 aa27.58■■■□□ 2.01
SCARF1-202ENST00000348987 HNRNPUL2Q1KMD3 747 aaKnown RBP27.54■■■□□ 2
SCARF1-202ENST00000348987 HMGXB3Q12766 1538 aa27.5■■□□□ 1.99
SCARF1-202ENST00000348987 VPS8Q8N3P4 1428 aa27.47■■□□□ 1.99
SCARF1-202ENST00000348987 TOP2BQ02880 1626 aa27.44■■□□□ 1.98
SCARF1-202ENST00000348987 SUPT16HQ9Y5B9 1047 aaKnown RBP27.41■■□□□ 1.98
SCARF1-202ENST00000348987 APLP2Q06481 763 aa27.36■■□□□ 1.97
SCARF1-202ENST00000348987 ANP32EQ9BTT0 268 aa27.31■■□□□ 1.96
SCARF1-202ENST00000348987 BIVM-ERCC5R4GMW8 1640 aa27.29■■□□□ 1.96
SCARF1-202ENST00000348987 CUX1P39880 1505 aa27.28■■□□□ 1.96
SCARF1-202ENST00000348987 TSHZ2Q9NRE2 1034 aa27.28■■□□□ 1.96
SCARF1-202ENST00000348987 CFTRP13569 1480 aa27.26■■□□□ 1.95
SCARF1-202ENST00000348987 CLSPNQ9HAW4 1339 aa27.26■■□□□ 1.95
SCARF1-202ENST00000348987 PRXQ9BXM0 1461 aa27.26■■□□□ 1.95
SCARF1-202ENST00000348987 BCL11AQ9H165 835 aa27.23■■□□□ 1.95
SCARF1-202ENST00000348987 CC2D2AQ9P2K1 1620 aa27.21■■□□□ 1.95
SCARF1-202ENST00000348987 ARAP1Q96P48 1450 aa27.16■■□□□ 1.94
SCARF1-202ENST00000348987 KANK4Q5T7N3 995 aaPredicted RBP27.16■■□□□ 1.94
SCARF1-202ENST00000348987 ERICH3Q5RHP9 1530 aa27.15■■□□□ 1.94
SCARF1-202ENST00000348987 KIF27Q86VH2 1401 aa27.1■■□□□ 1.93
SCARF1-202ENST00000348987 CADPSQ9ULU8 1353 aa27.08■■□□□ 1.93
SCARF1-202ENST00000348987 DNAJC5BQ9UF47 199 aa26.94■■□□□ 1.9
SCARF1-202ENST00000348987 ARHGAP35Q9NRY4 1499 aa26.93■■□□□ 1.9
SCARF1-202ENST00000348987 PRDM2Q13029 1718 aa26.93■■□□□ 1.9
SCARF1-202ENST00000348987 CUX2O14529 1486 aa26.93■■□□□ 1.9
SCARF1-202ENST00000348987 DHX57Q6P158 1386 aaKnown RBP26.91■■□□□ 1.9
SCARF1-202ENST00000348987 NESP48681 1621 aa26.9■■□□□ 1.9
SCARF1-202ENST00000348987 IGF1RP08069 1367 aa26.88■■□□□ 1.89
SCARF1-202ENST00000348987 FGD5Q6ZNL6 1462 aa26.86■■□□□ 1.89
SCARF1-202ENST00000348987 BCANQ96GW7 911 aa26.86■■□□□ 1.89
SCARF1-202ENST00000348987 FANCD2Q9BXW9 1451 aa26.84■■□□□ 1.89
SCARF1-202ENST00000348987 RRBP1Q9P2E9 1410 aaKnown RBP26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms