Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 AC106820.2-201ENST00000563775 3264 ntBASIC18.41■□□□□ 0.54
COL6A2P12110 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.41■□□□□ 0.54
COL6A2P12110 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 FAM207BP-201ENST00000447172 505 ntBASIC18.41■□□□□ 0.54
COL6A2P12110 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL6A2P12110 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.41■□□□□ 0.54
COL6A2P12110 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 AC008764.6-201ENST00000595909 2069 ntBASIC18.41■□□□□ 0.54
COL6A2P12110 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A2P12110 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A2P12110 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A2P12110 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A2P12110 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A2P12110 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL6A2P12110 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL6A2P12110 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A2P12110 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 AC008040.2-201ENST00000461049 708 ntBASIC18.4■□□□□ 0.54
COL6A2P12110 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A2P12110 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.4■□□□□ 0.54
COL6A2P12110 AC073195.1-201ENST00000607241 877 ntBASIC18.4■□□□□ 0.54
COL6A2P12110 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL6A2P12110 CR392000.1-201ENST00000624770 1228 ntBASIC18.4■□□□□ 0.54
COL6A2P12110 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL6A2P12110 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A2P12110 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A2P12110 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A2P12110 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A2P12110 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A2P12110 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A2P12110 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
COL6A2P12110 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.39■□□□□ 0.54
COL6A2P12110 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A2P12110 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A2P12110 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A2P12110 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL6A2P12110 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A2P12110 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.39■□□□□ 0.53
COL6A2P12110 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A2P12110 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.39■□□□□ 0.53
COL6A2P12110 RARRES2P10-201ENST00000564312 460 ntBASIC18.39■□□□□ 0.53
COL6A2P12110 AC006058.3-201ENST00000606217 1069 ntBASIC18.39■□□□□ 0.53
COL6A2P12110 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A2P12110 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
COL6A2P12110 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A2P12110 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A2P12110 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
COL6A2P12110 PCDHB18P-201ENST00000524813 2368 ntBASIC18.39■□□□□ 0.53
COL6A2P12110 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A2P12110 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A2P12110 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A2P12110 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A2P12110 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A2P12110 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A2P12110 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A2P12110 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A2P12110 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.38■□□□□ 0.53
COL6A2P12110 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
COL6A2P12110 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A2P12110 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
COL6A2P12110 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A2P12110 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.38■□□□□ 0.53
COL6A2P12110 AP000593.1-201ENST00000393668 712 ntBASIC18.38■□□□□ 0.53
COL6A2P12110 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.38■□□□□ 0.53
COL6A2P12110 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms