Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.385e-8■■■□□ 17.1
UPF1Q92900 RNF43-203ENST00000577716 4367 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.695e-8■■■□□ 17.1
UPF1Q92900 RNF43-207ENST00000583753 3560 ntTSL 2 BASIC10.2□□□□□ -0.785e-8■■■□□ 17.1
UPF1Q92900 CRTAP-201ENST00000320954 6630 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.533e-7■■■□□ 17.1
UPF1Q92900 TMEM167A-206ENST00000511450 3353 ntTSL 59.92□□□□□ -0.821e-7■■■□□ 17.1
UPF1Q92900 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.86■■□□□ 1.732e-6■■■□□ 17.1
UPF1Q92900 SHF-211ENST00000561278 578 ntTSL 418.12■□□□□ 0.492e-6■■■□□ 17.1
UPF1Q92900 LPAR2-204ENST00000588233 558 ntTSL 329.67■■■□□ 2.344e-6■■■□□ 17.1
UPF1Q92900 BRMS1-207ENST00000530238 1817 ntTSL 527.85■■■□□ 2.057e-8■■■□□ 17.1
UPF1Q92900 BRMS1-203ENST00000524699 1131 ntTSL 322.4■■□□□ 1.187e-8■■■□□ 17.1
UPF1Q92900 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC20.72■□□□□ 0.917e-8■■■□□ 17.1
UPF1Q92900 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.797e-8■■■□□ 17.1
UPF1Q92900 ARFGAP2-226ENST00000532478 940 ntTSL 519.85■□□□□ 0.777e-8■■■□□ 17.1
UPF1Q92900 PTPN7-218ENST00000496197 1463 ntTSL 217.59■□□□□ 0.417e-8■■■□□ 17.1
UPF1Q92900 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.374e-7■■■□□ 17.1
UPF1Q92900 DNASE1L1-203ENST00000369807 2110 ntAPPRIS P1 TSL 1 (best)17.3■□□□□ 0.367e-8■■■□□ 17.1
UPF1Q92900 PTPN7-204ENST00000462815 1147 ntTSL 217■□□□□ 0.317e-8■■■□□ 17.1
UPF1Q92900 CHD3-211ENST00000481999 2515 ntTSL 216.98■□□□□ 0.317e-8■■■□□ 17.1
UPF1Q92900 DNASE1L1-202ENST00000309585 2249 ntAPPRIS P1 TSL 1 (best)16.55■□□□□ 0.247e-8■■■□□ 17.1
UPF1Q92900 ARFGAP2-214ENST00000527927 850 ntTSL 516.23■□□□□ 0.197e-8■■■□□ 17.1
UPF1Q92900 AK2-209ENST00000491241 596 ntTSL 314.99□□□□□ -0.011e-28■■■□□ 17.1
UPF1Q92900 ARFGAP2-210ENST00000526342 474 ntTSL 514.94□□□□□ -0.027e-8■■■□□ 17.1
UPF1Q92900 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.037e-8■■■□□ 17.1
UPF1Q92900 ARFGAP2-213ENST00000527776 709 ntTSL 214.35□□□□□ -0.117e-8■■■□□ 17.1
UPF1Q92900 DNASE1L1-204ENST00000369808 2666 ntAPPRIS P1 TSL 1 (best)13.98□□□□□ -0.177e-8■■■□□ 17.1
UPF1Q92900 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC13.35□□□□□ -0.274e-7■■■□□ 17.1
UPF1Q92900 DNASE1L1-201ENST00000014935 2652 ntAPPRIS P1 TSL 213.27□□□□□ -0.297e-8■■■□□ 17.1
UPF1Q92900 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.374e-7■■■□□ 17.1
UPF1Q92900 DNASE1L1-205ENST00000369809 3008 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.437e-8■■■□□ 17.1
UPF1Q92900 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC12.24□□□□□ -0.457e-8■■■□□ 17.1
UPF1Q92900 CHD3-208ENST00000470531 3744 ntTSL 210.4□□□□□ -0.747e-8■■■□□ 17.1
UPF1Q92900 CHD3-201ENST00000330494 7328 ntAPPRIS P4 TSL 1 (best) BASIC10.2□□□□□ -0.787e-8■■■□□ 17.1
UPF1Q92900 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.877e-8■■■□□ 17.1
UPF1Q92900 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.414e-6■■■□□ 17.1
UPF1Q92900 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.744e-6■■■□□ 17.1
UPF1Q92900 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC24.5■■□□□ 1.513e-9■■■□□ 17.1
UPF1Q92900 CHERP-206ENST00000597261 674 ntTSL 222.71■■□□□ 1.233e-6■■■□□ 17.1
UPF1Q92900 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.133e-9■■■□□ 17.1
UPF1Q92900 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.113e-9■■■□□ 17.1
UPF1Q92900 CHERP-202ENST00000544299 1755 ntTSL 221.69■■□□□ 1.063e-6■■■□□ 17.1
UPF1Q92900 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC21.27■■□□□ 13e-9■■■□□ 17.1
UPF1Q92900 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC20.62■□□□□ 0.892e-6■■■□□ 17.1
UPF1Q92900 MXRA7-205ENST00000588114 521 ntAPPRIS ALT2 TSL 4 BASIC17.29■□□□□ 0.365e-8■■■□□ 17.1
UPF1Q92900 VAMP8-201ENST00000263864 774 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.332e-6■■■□□ 17.1
UPF1Q92900 VAMP8-202ENST00000409760 805 ntTSL 3 BASIC14.05□□□□□ -0.162e-6■■■□□ 17.1
UPF1Q92900 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.243e-7■■■□□ 17.1
UPF1Q92900 LGR5-206ENST00000550851 4095 ntTSL 212.01□□□□□ -0.493e-7■■■□□ 17.1
UPF1Q92900 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC11.78□□□□□ -0.522e-6■■■□□ 17.1
UPF1Q92900 NEDD4L-229ENST00000590506 2743 ntTSL 27.48□□□□□ -1.212e-6■■■□□ 17.1
UPF1Q92900 EARS2-214ENST00000564987 2870 ntTSL 1 (best)11.66□□□□□ -0.541e-7■■■□□ 17.1
UPF1Q92900 EARS2-207ENST00000563459 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.621e-7■■■□□ 17.1
UPF1Q92900 EARS2-201ENST00000449606 3961 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.71e-7■■■□□ 17.1
UPF1Q92900 EARS2-212ENST00000564759 599 nt9.2□□□□□ -0.941e-7■■■□□ 17.1
UPF1Q92900 EARS2-213ENST00000564776 290 ntTSL 26.01□□□□□ -1.451e-7■■■□□ 17.1
UPF1Q92900 ARHGAP35-205ENST00000599284 931 ntTSL 220.16■□□□□ 0.823e-8■■■□□ 17.1
UPF1Q92900 STMN3-204ENST00000632676 519 ntTSL 419.14■□□□□ 0.654e-9■■■□□ 17.1
UPF1Q92900 STMN3-205ENST00000634126 605 ntTSL 314.2□□□□□ -0.144e-9■■■□□ 17.1
UPF1Q92900 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC33.34■■■□□ 2.931e-15■■■□□ 17
UPF1Q92900 SRRM2-217ENST00000573692 459 ntTSL 322.46■■□□□ 1.191e-15■■■□□ 17
UPF1Q92900 SRRM2-218ENST00000574331 1759 ntTSL 221.22■□□□□ 0.991e-15■■■□□ 17
UPF1Q92900 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.271e-15■■■□□ 17
UPF1Q92900 SRRM2-202ENST00000570539 431 ntTSL 215.27■□□□□ 0.041e-15■■■□□ 17
UPF1Q92900 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC24.66■■□□□ 1.549e-9■■■□□ 17
UPF1Q92900 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.036e-7■■■□□ 17
UPF1Q92900 CENPO-206ENST00000473706 4272 ntTSL 2 BASIC12.85□□□□□ -0.356e-7■■■□□ 17
UPF1Q92900 CENPO-201ENST00000260662 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.496e-7■■■□□ 17
UPF1Q92900 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.129e-8■■■□□ 17
UPF1Q92900 ATXN2L-222ENST00000567024 525 ntTSL 324.08■■□□□ 1.451e-16■■■□□ 17
UPF1Q92900 SHISA5-205ENST00000424965 884 ntTSL 524.13■■□□□ 1.452e-13■■■□□ 17
UPF1Q92900 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.297e-9■■■□□ 17
UPF1Q92900 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC12.02□□□□□ -0.497e-9■■■□□ 17
UPF1Q92900 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.8□□□□□ -1.643e-6■■■□□ 17
UPF1Q92900 CSNK1G2-206ENST00000589861 756 ntTSL 535.32■■■■□ 3.247e-19■■■□□ 17
UPF1Q92900 CALM3-211ENST00000598871 561 ntTSL 4 BASIC26.02■■□□□ 1.767e-18■■■□□ 17
UPF1Q92900 CALM3-206ENST00000594523 540 ntTSL 4 BASIC18.05■□□□□ 0.487e-18■■■□□ 17
UPF1Q92900 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.068e-11■■■□□ 17
UPF1Q92900 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.048e-11■■■□□ 17
UPF1Q92900 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.138e-11■■■□□ 17
UPF1Q92900 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.496e-8■■■□□ 17
UPF1Q92900 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.366e-8■■■□□ 17
UPF1Q92900 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.046e-8■■■□□ 17
UPF1Q92900 TMEM45B-202ENST00000524567 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.431e-8■■■□□ 17
UPF1Q92900 SLC2A3-202ENST00000469295 1030 ntTSL 212.47□□□□□ -0.412e-9■■■□□ 17
UPF1Q92900 ESRP2-211ENST00000566774 2072 ntTSL 216.97■□□□□ 0.314e-9■■■□□ 17
UPF1Q92900 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.114e-9■■■□□ 17
UPF1Q92900 ESRP2-201ENST00000251366 3228 ntTSL 1 (best)12.13□□□□□ -0.474e-9■■■□□ 17
UPF1Q92900 ESRP2-210ENST00000565858 3386 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.554e-9■■■□□ 17
UPF1Q92900 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.54■■□□□ 1.041e-6■■■□□ 17
UPF1Q92900 SLC47A1-205ENST00000497548 1900 ntTSL 221.53■■□□□ 1.041e-6■■■□□ 17
UPF1Q92900 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.78■□□□□ 0.61e-6■■■□□ 17
UPF1Q92900 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.361e-6■■■□□ 17
UPF1Q92900 SLC47A1-213ENST00000581558 414 ntTSL 37.14□□□□□ -1.271e-6■■■□□ 17
UPF1Q92900 FKBP4-201ENST00000001008 3732 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.565e-13■■■□□ 17
UPF1Q92900 FKBP4-207ENST00000544366 287 ntTSL 38.47□□□□□ -1.055e-13■■■□□ 17
UPF1Q92900 MCF2L-219ENST00000453297 1819 ntTSL 528.59■■■□□ 2.173e-8■■■□□ 17
UPF1Q92900 RPS19BP1-203ENST00000459956 852 ntTSL 228.47■■■□□ 2.153e-8■■■□□ 17
UPF1Q92900 RPS19BP1-202ENST00000420879 861 ntTSL 226.18■■□□□ 1.783e-8■■■□□ 17
UPF1Q92900 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.393e-8■■■□□ 17
UPF1Q92900 MCF2L-201ENST00000261963 2419 ntTSL 1 (best)23.35■■□□□ 1.333e-8■■■□□ 17
UPF1Q92900 ESPN-206ENST00000468561 664 ntTSL 222.49■■□□□ 1.192e-7■■■□□ 17
Retrieved 100 of 15,879 protein–RNA pairs in 190.7 ms