RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-204ENST00000462815 NISCHQ9Y2I1 1504 aa28.54■■■□□ 2.16
PTPN7-204ENST00000462815 ABCC9O60706 1549 aa25.69■■□□□ 1.7
PTPN7-204ENST00000462815 CCDC180Q9P1Z9 1646 aa25.68■■□□□ 1.7
PTPN7-204ENST00000462815 RB1CC1Q8TDY2 1594 aa24.43■■□□□ 1.5
PTPN7-204ENST00000462815 NACADO15069 1562 aa24.27■■□□□ 1.48
PTPN7-204ENST00000462815 DNAJC5BQ9UF47 199 aa24.25■■□□□ 1.47
PTPN7-204ENST00000462815 MYO15BQ96JP2 1530 aa23.97■■□□□ 1.43
PTPN7-204ENST00000462815 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
PTPN7-204ENST00000462815 DCAF8L2P0C7V8 631 aa23.88■■□□□ 1.41
PTPN7-204ENST00000462815 PABPN1Q86U42 306 aaKnown RBP eCLIP23.86■■□□□ 1.41
PTPN7-204ENST00000462815 BICRAQ9NZM4 1560 aa23.84■■□□□ 1.41
PTPN7-204ENST00000462815 ZCCHC6Q5VYS8 1495 aaKnown RBP23.68■■□□□ 1.38
PTPN7-204ENST00000462815 DCAF1Q9Y4B6 1507 aa23.62■■□□□ 1.37
PTPN7-204ENST00000462815 SHROOM4Q9ULL8 1493 aa23.46■■□□□ 1.35
PTPN7-204ENST00000462815 SCRIBQ14160 1630 aa23.34■■□□□ 1.33
PTPN7-204ENST00000462815 CC2D2AQ9P2K1 1620 aa23.26■■□□□ 1.31
PTPN7-204ENST00000462815 EIF4G1Q04637 1599 aaKnown RBP23.2■■□□□ 1.3
PTPN7-204ENST00000462815 CECR2Q9BXF3 1484 aa23.17■■□□□ 1.3
PTPN7-204ENST00000462815 NCAPD3P42695 1498 aa22.42■■□□□ 1.18
PTPN7-204ENST00000462815 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
PTPN7-204ENST00000462815 SMARCA4P51532 1647 aa22.3■■□□□ 1.16
PTPN7-204ENST00000462815 DNAJC5Q9H3Z4 198 aa22.28■■□□□ 1.16
PTPN7-204ENST00000462815 HMGXB3Q12766 1538 aa22.26■■□□□ 1.15
PTPN7-204ENST00000462815 SMARCA2P51531 1590 aa22.23■■□□□ 1.15
PTPN7-204ENST00000462815 CUX2O14529 1486 aa22.22■■□□□ 1.15
PTPN7-204ENST00000462815 BAZ1AQ9NRL2 1556 aaPredicted RBP22.14■■□□□ 1.13
PTPN7-204ENST00000462815 PEG3Q9GZU2 1588 aa22.13■■□□□ 1.13
PTPN7-204ENST00000462815 ERCC6Q03468 1493 aa22.13■■□□□ 1.13
PTPN7-204ENST00000462815 NESP48681 1621 aa22.09■■□□□ 1.13
PTPN7-204ENST00000462815 BAZ1BQ9UIG0 1483 aaKnown RBP22.06■■□□□ 1.12
PTPN7-204ENST00000462815 MROH2BQ7Z745 1585 aa22■■□□□ 1.11
PTPN7-204ENST00000462815 THOC2Q8NI27 1593 aaKnown RBP21.95■■□□□ 1.11
PTPN7-204ENST00000462815 LAMC3Q9Y6N6 1575 aa21.91■■□□□ 1.1
PTPN7-204ENST00000462815 KIF21AQ7Z4S6 1674 aa21.81■■□□□ 1.08
PTPN7-204ENST00000462815 PDS5BQ9NTI5 1447 aa21.72■■□□□ 1.07
PTPN7-204ENST00000462815 WIZO95785 1651 aa21.72■■□□□ 1.07
PTPN7-204ENST00000462815 CADPSQ9ULU8 1353 aa21.69■■□□□ 1.06
PTPN7-204ENST00000462815 WDR62O43379 1518 aa21.6■■□□□ 1.05
PTPN7-204ENST00000462815 MRC2Q9UBG0 1479 aa21.59■■□□□ 1.05
PTPN7-204ENST00000462815 RSF1Q96T23 1441 aaPredicted RBP21.49■■□□□ 1.03
PTPN7-204ENST00000462815 CFTRP13569 1480 aa21.47■■□□□ 1.03
PTPN7-204ENST00000462815 CEP164Q9UPV0 1460 aa21.46■■□□□ 1.03
PTPN7-204ENST00000462815 FANCD2Q9BXW9 1451 aa21.45■■□□□ 1.02
PTPN7-204ENST00000462815 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
PTPN7-204ENST00000462815 URB2Q14146 1524 aaKnown RBP21.33■■□□□ 1
PTPN7-204ENST00000462815 PRDM2Q13029 1718 aa21.24■□□□□ 0.99
PTPN7-204ENST00000462815 CCDC88BA6NC98 1476 aa21.19■□□□□ 0.98
PTPN7-204ENST00000462815 TRIM41Q8WV44 630 aa21.14■□□□□ 0.97
PTPN7-204ENST00000462815 OSCARQ8IYS5 282 aa21.07■□□□□ 0.96
PTPN7-204ENST00000462815 ZNF608Q9ULD9 1512 aaPredicted RBP21.07■□□□□ 0.96
PTPN7-204ENST00000462815 IFT140Q96RY7 1462 aa21.06■□□□□ 0.96
PTPN7-204ENST00000462815 TOPBP1Q92547 1522 aa21.05■□□□□ 0.96
PTPN7-204ENST00000462815 DNMBPQ6XZF7 1577 aa20.97■□□□□ 0.95
PTPN7-204ENST00000462815 EIF4G3O43432 1585 aaKnown RBP20.95■□□□□ 0.94
PTPN7-204ENST00000462815 ABCC8Q09428 1581 aa20.94■□□□□ 0.94
PTPN7-204ENST00000462815 RIMBP3CA6NJZ7 1639 aa20.94■□□□□ 0.94
PTPN7-204ENST00000462815 RIMBP3BA6NNM3 1639 aa20.94■□□□□ 0.94
PTPN7-204ENST00000462815 RIMBP3Q9UFD9 1639 aa20.94■□□□□ 0.94
PTPN7-204ENST00000462815 TARBP1Q13395 1621 aaKnown RBP20.93■□□□□ 0.94
PTPN7-204ENST00000462815 ARHGEF11O15085 1522 aa20.86■□□□□ 0.93
PTPN7-204ENST00000462815 POLA1P09884 1462 aaPredicted RBP20.84■□□□□ 0.93
PTPN7-204ENST00000462815 AQRO60306 1485 aaKnown RBP eCLIP20.81■□□□□ 0.923e-7■■■■■ 30.8
PTPN7-204ENST00000462815 CHD1O14646 1710 aa20.79■□□□□ 0.92
PTPN7-204ENST00000462815 RAD54L2Q9Y4B4 1467 aa20.75■□□□□ 0.91
PTPN7-204ENST00000462815 CUX1P39880 1505 aa20.68■□□□□ 0.9
PTPN7-204ENST00000462815 WDR97A6NE52 1622 aa20.68■□□□□ 0.9
PTPN7-204ENST00000462815 FGD5Q6ZNL6 1462 aa20.68■□□□□ 0.9
PTPN7-204ENST00000462815 SOGA1O94964 1423 aa20.67■□□□□ 0.9
PTPN7-204ENST00000462815 ARAP1Q96P48 1450 aa20.67■□□□□ 0.9
PTPN7-204ENST00000462815 TDRD9Q8NDG6 1382 aaKnown RBP20.65■□□□□ 0.9
PTPN7-204ENST00000462815 SNAPC4Q5SXM2 1469 aa20.62■□□□□ 0.89
PTPN7-204ENST00000462815 CLASP1Q7Z460 1538 aa20.62■□□□□ 0.89
PTPN7-204ENST00000462815 CYB5RLQ6IPT4 315 aa20.58■□□□□ 0.89
PTPN7-204ENST00000462815 MAGI1Q96QZ7 1491 aaPredicted RBP20.56■□□□□ 0.88
PTPN7-204ENST00000462815 FBLN2P98095 1184 aa20.55■□□□□ 0.88
PTPN7-204ENST00000462815 GRIN2BQ13224 1484 aa20.53■□□□□ 0.88
PTPN7-204ENST00000462815 SYNJ1O43426 1573 aa20.5■□□□□ 0.87
PTPN7-204ENST00000462815 SYNJ2O15056 1496 aa20.5■□□□□ 0.87
PTPN7-204ENST00000462815 PBRM1Q86U86 1689 aa20.48■□□□□ 0.87
PTPN7-204ENST00000462815 ABCA5Q8WWZ7 1642 aa20.48■□□□□ 0.87
PTPN7-204ENST00000462815 ABCA10Q8WWZ4 1543 aa20.46■□□□□ 0.87
PTPN7-204ENST00000462815 GAPVD1Q14C86 1478 aa20.44■□□□□ 0.86
PTPN7-204ENST00000462815 CHMP7Q8WUX9 453 aaPredicted RBP20.42■□□□□ 0.86
PTPN7-204ENST00000462815 BIVM-ERCC5R4GMW8 1640 aa20.34■□□□□ 0.85
PTPN7-204ENST00000462815 ADAMTS12P58397 1594 aa20.31■□□□□ 0.84
PTPN7-204ENST00000462815 TRHP20396 242 aaPredicted RBP20.31■□□□□ 0.84
PTPN7-204ENST00000462815 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
PTPN7-204ENST00000462815 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
PTPN7-204ENST00000462815 WRNQ14191 1432 aaPredicted RBP eCLIP20.28■□□□□ 0.84
PTPN7-204ENST00000462815 SUPT5HO00267 1087 aaKnown RBP20.28■□□□□ 0.84
PTPN7-204ENST00000462815 ERCC6L2Q5T890 1561 aa20.28■□□□□ 0.84
PTPN7-204ENST00000462815 NUP160Q12769 1436 aa20.27■□□□□ 0.83
PTPN7-204ENST00000462815 CEP170Q5SW79 1584 aa20.26■□□□□ 0.83
PTPN7-204ENST00000462815 SHROOM2Q13796 1616 aa20.22■□□□□ 0.83
PTPN7-204ENST00000462815 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
PTPN7-204ENST00000462815 FHAD1B1AJZ9 1412 aa20.19■□□□□ 0.82
PTPN7-204ENST00000462815 RUSC2Q8N2Y8 1516 aa20.04■□□□□ 0.8
PTPN7-204ENST00000462815 PRG4Q92954 1404 aaPredicted RBP20■□□□□ 0.79
PTPN7-204ENST00000462815 KIF13AQ9H1H9 1805 aa19.97■□□□□ 0.79
PTPN7-204ENST00000462815 JPH4Q96JJ6 628 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms