RNA–Protein interactions for RNA: ENST00000550851.5

LGR5-206, Transcript of leucine rich repeat containing G protein-coupled receptor 5, humanhuman

TSL 2

Gene LGR5, Length 4,095 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LGR5-206ENST00000550851 NISCHQ9Y2I1 1504 aa21.37■■□□□ 1.01
LGR5-206ENST00000550851 DCAF8L2P0C7V8 631 aa21.16■□□□□ 0.98
LGR5-206ENST00000550851 SUPT5HO00267 1087 aaKnown RBP20.13■□□□□ 0.81
LGR5-206ENST00000550851 SHROOM4Q9ULL8 1493 aa20.11■□□□□ 0.81
LGR5-206ENST00000550851 EHMT2Q96KQ7 1210 aa19.3■□□□□ 0.68
LGR5-206ENST00000550851 FAM9AQ8IZU1 332 aaPredicted RBP18.93■□□□□ 0.62
LGR5-206ENST00000550851 TRIM41Q8WV44 630 aa18.56■□□□□ 0.56
LGR5-206ENST00000550851 TTBK1Q5TCY1 1321 aaPredicted RBP18.56■□□□□ 0.56
LGR5-206ENST00000550851 PCGF6Q9BYE7 350 aa18.47■□□□□ 0.55
LGR5-206ENST00000550851 RANGAP1P46060 587 aaPredicted RBP18.45■□□□□ 0.54
LGR5-206ENST00000550851 APLP2Q06481 763 aa18.35■□□□□ 0.53
LGR5-206ENST00000550851 ABCC9O60706 1549 aa18.35■□□□□ 0.53
LGR5-206ENST00000550851 UBTFP17480 764 aaKnown RBP18.2■□□□□ 0.5
LGR5-206ENST00000550851 CHIC1Q5VXU3 224 aa18.19■□□□□ 0.5
LGR5-206ENST00000550851 PPARGC1BQ86YN6 1023 aaKnown RBP18.15■□□□□ 0.5
LGR5-206ENST00000550851 LOC105371045A0A1W2PR82 267 aa18.14■□□□□ 0.5
LGR5-206ENST00000550851 PABPN1Q86U42 306 aaKnown RBP eCLIP18.13■□□□□ 0.49
LGR5-206ENST00000550851 ATP1B4Q9UN42 357 aaPredicted RBP18.05■□□□□ 0.48
LGR5-206ENST00000550851 CCER1Q8TC90 406 aaPredicted RBP17.89■□□□□ 0.45
LGR5-206ENST00000550851 ZCCHC6Q5VYS8 1495 aaKnown RBP17.72■□□□□ 0.43
LGR5-206ENST00000550851 TRIM26Q12899 539 aaPredicted RBP17.69■□□□□ 0.42
LGR5-206ENST00000550851 ZEB1P37275 1124 aaPredicted RBP17.62■□□□□ 0.41
LGR5-206ENST00000550851 ITGAEP38570 1179 aa17.6■□□□□ 0.41
LGR5-206ENST00000550851 SCRIBQ14160 1630 aa17.57■□□□□ 0.4
LGR5-206ENST00000550851 HNRNPUL2Q1KMD3 747 aaKnown RBP17.52■□□□□ 0.4
LGR5-206ENST00000550851 CCDC180Q9P1Z9 1646 aa17.5■□□□□ 0.39
LGR5-206ENST00000550851 HRCP23327 699 aa17.47■□□□□ 0.39
LGR5-206ENST00000550851 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.45■□□□□ 0.38
LGR5-206ENST00000550851 YTHDC1Q96MU7 727 aaKnown RBP17.32■□□□□ 0.36
LGR5-206ENST00000550851 CENPBP07199 599 aaPredicted RBP17.24■□□□□ 0.35
LGR5-206ENST00000550851 CSRNP3Q8WYN3 585 aa17.24■□□□□ 0.35
LGR5-206ENST00000550851 PELP1Q8IZL8 1130 aaKnown RBP17.17■□□□□ 0.34
LGR5-206ENST00000550851 P3H3Q8IVL6 736 aa17.16■□□□□ 0.34
LGR5-206ENST00000550851 FAM50AQ14320 339 aaKnown RBP17.14■□□□□ 0.33
LGR5-206ENST00000550851 FBLN2P98095 1184 aa17.14■□□□□ 0.33
LGR5-206ENST00000550851 MYT1LQ9UL68 1186 aa17.13■□□□□ 0.33
LGR5-206ENST00000550851 RSF1Q96T23 1441 aaPredicted RBP17.11■□□□□ 0.33
LGR5-206ENST00000550851 ARID3CA6NKF2 412 aa17.06■□□□□ 0.32
LGR5-206ENST00000550851 POLR3GLQ9BT43 218 aa17.04■□□□□ 0.32
LGR5-206ENST00000550851 RB1CC1Q8TDY2 1594 aa17.04■□□□□ 0.32
LGR5-206ENST00000550851 CNGB1Q14028 1251 aaPredicted RBP17.03■□□□□ 0.32
LGR5-206ENST00000550851 MYO15BQ96JP2 1530 aa16.96■□□□□ 0.31
LGR5-206ENST00000550851 CECR2Q9BXF3 1484 aa16.96■□□□□ 0.31
LGR5-206ENST00000550851 NACADO15069 1562 aa16.95■□□□□ 0.3
LGR5-206ENST00000550851 NEUROD1Q13562 356 aa16.93■□□□□ 0.3
LGR5-206ENST00000550851 TRIM52Q96A61 297 aa16.9■□□□□ 0.3
LGR5-206ENST00000550851 DIEXFQ68CQ4 756 aaKnown RBP16.88■□□□□ 0.29
LGR5-206ENST00000550851 DCAF1Q9Y4B6 1507 aa16.83■□□□□ 0.29
LGR5-206ENST00000550851 NEFLP07196 543 aa16.81■□□□□ 0.28
LGR5-206ENST00000550851 ZNF326Q5BKZ1 582 aaKnown RBP16.71■□□□□ 0.27
LGR5-206ENST00000550851 ZNF777Q9ULD5 760 aaPredicted RBP16.71■□□□□ 0.27
LGR5-206ENST00000550851 BAZ1BQ9UIG0 1483 aaKnown RBP16.71■□□□□ 0.27
LGR5-206ENST00000550851 MROH2BQ7Z745 1585 aa16.67■□□□□ 0.26
LGR5-206ENST00000550851 WRNQ14191 1432 aaPredicted RBP eCLIP16.67■□□□□ 0.262e-10■■■■■ 91.9
LGR5-206ENST00000550851 BAZ1AQ9NRL2 1556 aaPredicted RBP16.67■□□□□ 0.26
LGR5-206ENST00000550851 CLIP1P30622 1438 aa16.61■□□□□ 0.25
LGR5-206ENST00000550851 ZNF316A6NFI3 1004 aaPredicted RBP16.59■□□□□ 0.25
LGR5-206ENST00000550851 SLC4A1APQ9BWU0 796 aaKnown RBP16.59■□□□□ 0.25
LGR5-206ENST00000550851 CHIC2Q9UKJ5 165 aa16.56■□□□□ 0.24
LGR5-206ENST00000550851 CEP162Q5TB80 1403 aa16.56■□□□□ 0.24
LGR5-206ENST00000550851 CDK11AQ9UQ88 783 aaPredicted RBP16.54■□□□□ 0.24
LGR5-206ENST00000550851 ERICH6Q7L0X2 663 aa16.52■□□□□ 0.24
LGR5-206ENST00000550851 SOGA1O94964 1423 aa16.51■□□□□ 0.23
LGR5-206ENST00000550851 CHMP7Q8WUX9 453 aaPredicted RBP16.51■□□□□ 0.23
LGR5-206ENST00000550851 CCDC88BA6NC98 1476 aa16.48■□□□□ 0.23
LGR5-206ENST00000550851 GOLGA3Q08378 1498 aa16.47■□□□□ 0.23
LGR5-206ENST00000550851 EEA1Q15075 1411 aa16.46■□□□□ 0.23
LGR5-206ENST00000550851 ABCC8Q09428 1581 aa16.44■□□□□ 0.22
LGR5-206ENST00000550851 MTUS2Q5JR59 1369 aa16.44■□□□□ 0.22
LGR5-206ENST00000550851 KIF27Q86VH2 1401 aa16.42■□□□□ 0.22
LGR5-206ENST00000550851 WIZO95785 1651 aa16.41■□□□□ 0.22
LGR5-206ENST00000550851 ANP32CO43423 234 aa16.41■□□□□ 0.22
LGR5-206ENST00000550851 TNIKQ9UKE5 1360 aa16.41■□□□□ 0.22
LGR5-206ENST00000550851 GTF3C3Q9Y5Q9 886 aa16.39■□□□□ 0.21
LGR5-206ENST00000550851 BCANQ96GW7 911 aa16.36■□□□□ 0.21
LGR5-206ENST00000550851 CEP164Q9UPV0 1460 aa16.35■□□□□ 0.21
LGR5-206ENST00000550851 HIRIP3Q9BW71 556 aaPredicted RBP16.34■□□□□ 0.21
LGR5-206ENST00000550851 RRP7BPQ9NSQ0 103 aa16.34■□□□□ 0.21
LGR5-206ENST00000550851 TONSLQ96HA7 1378 aa16.34■□□□□ 0.21
LGR5-206ENST00000550851 DDX10Q13206 875 aaKnown RBP16.32■□□□□ 0.2
LGR5-206ENST00000550851 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.32■□□□□ 0.29e-7■□□□□ 10.3
LGR5-206ENST00000550851 CUX2O14529 1486 aa16.3■□□□□ 0.2
LGR5-206ENST00000550851 KCNH8Q96L42 1107 aa16.29■□□□□ 0.2
LGR5-206ENST00000550851 NPM1P06748 294 aaKnown RBP eCLIP16.27■□□□□ 0.19
LGR5-206ENST00000550851 TSPY4P0CV99 314 aa16.26■□□□□ 0.19
LGR5-206ENST00000550851 TSPY10P0CW01 314 aa16.26■□□□□ 0.19
LGR5-206ENST00000550851 CARMIL1Q5VZK9 1371 aa16.26■□□□□ 0.19
LGR5-206ENST00000550851 CHGAP10645 457 aaKnown RBP16.25■□□□□ 0.19
LGR5-206ENST00000550851 SMARCA2P51531 1590 aa16.22■□□□□ 0.19
LGR5-206ENST00000550851 ERCC6Q03468 1493 aa16.21■□□□□ 0.19
LGR5-206ENST00000550851 KDM2AQ9Y2K7 1162 aa16.21■□□□□ 0.19
LGR5-206ENST00000550851 ATAD2BQ9ULI0 1458 aa16.21■□□□□ 0.19
LGR5-206ENST00000550851 TDRD9Q8NDG6 1382 aaKnown RBP16.2■□□□□ 0.18
LGR5-206ENST00000550851 ACIN1Q9UKV3 1341 aaKnown RBP16.2■□□□□ 0.18
LGR5-206ENST00000550851 TOP2AP11388 1531 aaKnown RBP16.2■□□□□ 0.18
LGR5-206ENST00000550851 PLEKHD1A6NEE1 506 aa16.19■□□□□ 0.18
LGR5-206ENST00000550851 PLPPR3Q6T4P5 718 aa16.18■□□□□ 0.18
LGR5-206ENST00000550851 KANK4Q5T7N3 995 aaPredicted RBP16.17■□□□□ 0.18
LGR5-206ENST00000550851 MIER1Q8N108 512 aa16.15■□□□□ 0.18
LGR5-206ENST00000550851 SMARCA4P51532 1647 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms