RNA–Protein interactions for RNA: ENST00000252108.7

UBE4A-201, Transcript of ubiquitination factor E4A, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE4A, Length 6,103 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4A-201ENST00000252108 NISCHQ9Y2I1 1504 aa9.31□□□□□ -0.92
UBE4A-201ENST00000252108 CCDC180Q9P1Z9 1646 aa8.15□□□□□ -1.1
UBE4A-201ENST00000252108 ZCCHC6Q5VYS8 1495 aaKnown RBP7.95□□□□□ -1.14
UBE4A-201ENST00000252108 DCAF1Q9Y4B6 1507 aa7.86□□□□□ -1.15
UBE4A-201ENST00000252108 MYO15BQ96JP2 1530 aa7.69□□□□□ -1.18
UBE4A-201ENST00000252108 ABCC9O60706 1549 aa7.51□□□□□ -1.21
UBE4A-201ENST00000252108 NACADO15069 1562 aa7.38□□□□□ -1.23
UBE4A-201ENST00000252108 EIF4G1Q04637 1599 aaKnown RBP7.38□□□□□ -1.23
UBE4A-201ENST00000252108 UNC13AQ9UPW8 1703 aa7.37□□□□□ -1.23
UBE4A-201ENST00000252108 SHROOM4Q9ULL8 1493 aa7.29□□□□□ -1.24
UBE4A-201ENST00000252108 SCRIBQ14160 1630 aa7.27□□□□□ -1.25
UBE4A-201ENST00000252108 RSF1Q96T23 1441 aaPredicted RBP7.26□□□□□ -1.25
UBE4A-201ENST00000252108 RB1CC1Q8TDY2 1594 aa7.24□□□□□ -1.25
UBE4A-201ENST00000252108 BAZ1AQ9NRL2 1556 aaPredicted RBP7.22□□□□□ -1.25
UBE4A-201ENST00000252108 BICRAQ9NZM4 1560 aa7.21□□□□□ -1.26
UBE4A-201ENST00000252108 PEG3Q9GZU2 1588 aa7.2□□□□□ -1.26
UBE4A-201ENST00000252108 MROH2BQ7Z745 1585 aa7.19□□□□□ -1.26
UBE4A-201ENST00000252108 CECR2Q9BXF3 1484 aa7.16□□□□□ -1.26
UBE4A-201ENST00000252108 WIZO95785 1651 aa7.16□□□□□ -1.26
UBE4A-201ENST00000252108 CHIC1Q5VXU3 224 aa7.15□□□□□ -1.27
UBE4A-201ENST00000252108 SMARCA4P51532 1647 aa7.13□□□□□ -1.27
UBE4A-201ENST00000252108 TOP2AP11388 1531 aaKnown RBP7.09□□□□□ -1.27
UBE4A-201ENST00000252108 SMARCA2P51531 1590 aa7.08□□□□□ -1.28
UBE4A-201ENST00000252108 SUPT5HO00267 1087 aaKnown RBP7.02□□□□□ -1.29
UBE4A-201ENST00000252108 CCDC88BA6NC98 1476 aa6.95□□□□□ -1.3
UBE4A-201ENST00000252108 PRDM2Q13029 1718 aa6.92□□□□□ -1.3
UBE4A-201ENST00000252108 BIVM-ERCC5R4GMW8 1640 aa6.9□□□□□ -1.3
UBE4A-201ENST00000252108 HMGXB3Q12766 1538 aa6.89□□□□□ -1.31
UBE4A-201ENST00000252108 ATAD2BQ9ULI0 1458 aa6.87□□□□□ -1.31
UBE4A-201ENST00000252108 SYNJ1O43426 1573 aa6.87□□□□□ -1.31
UBE4A-201ENST00000252108 ABCC8Q09428 1581 aa6.86□□□□□ -1.31
UBE4A-201ENST00000252108 KIF21BO75037 1637 aa6.84□□□□□ -1.31
UBE4A-201ENST00000252108 WRNQ14191 1432 aaPredicted RBP eCLIP6.83□□□□□ -1.32
UBE4A-201ENST00000252108 TOP2BQ02880 1626 aa6.83□□□□□ -1.32
UBE4A-201ENST00000252108 DCAF8L2P0C7V8 631 aa6.82□□□□□ -1.32
UBE4A-201ENST00000252108 NCAPD3P42695 1498 aa6.81□□□□□ -1.32
UBE4A-201ENST00000252108 HRCP23327 699 aa6.76□□□□□ -1.33
UBE4A-201ENST00000252108 RUSC2Q8N2Y8 1516 aa6.76□□□□□ -1.33
UBE4A-201ENST00000252108 EEA1Q15075 1411 aa6.75□□□□□ -1.33
UBE4A-201ENST00000252108 LOC105371045A0A1W2PR82 267 aa6.75□□□□□ -1.33
UBE4A-201ENST00000252108 SOGA1O94964 1423 aa6.73□□□□□ -1.33
UBE4A-201ENST00000252108 CFTRP13569 1480 aa6.72□□□□□ -1.33
UBE4A-201ENST00000252108 WDR97A6NE52 1622 aa6.72□□□□□ -1.33
UBE4A-201ENST00000252108 ERICH3Q5RHP9 1530 aa6.72□□□□□ -1.33
UBE4A-201ENST00000252108 BAZ1BQ9UIG0 1483 aaKnown RBP6.71□□□□□ -1.33
UBE4A-201ENST00000252108 CUX1P39880 1505 aa6.71□□□□□ -1.33
UBE4A-201ENST00000252108 PRXQ9BXM0 1461 aa6.7□□□□□ -1.34
UBE4A-201ENST00000252108 TNIKQ9UKE5 1360 aa6.69□□□□□ -1.34
UBE4A-201ENST00000252108 CEP162Q5TB80 1403 aa6.64□□□□□ -1.35
UBE4A-201ENST00000252108 GOLGA3Q08378 1498 aa6.63□□□□□ -1.35
UBE4A-201ENST00000252108 TRIM41Q8WV44 630 aa6.63□□□□□ -1.35
UBE4A-201ENST00000252108 CEP164Q9UPV0 1460 aa6.62□□□□□ -1.35
UBE4A-201ENST00000252108 TRIM26Q12899 539 aaPredicted RBP6.61□□□□□ -1.35
UBE4A-201ENST00000252108 CC2D2AQ9P2K1 1620 aa6.61□□□□□ -1.35
UBE4A-201ENST00000252108 PELP1Q8IZL8 1130 aaKnown RBP6.61□□□□□ -1.35
UBE4A-201ENST00000252108 RAPGEF2Q9Y4G8 1499 aa6.61□□□□□ -1.35
UBE4A-201ENST00000252108 ARAP1Q96P48 1450 aa6.6□□□□□ -1.35
UBE4A-201ENST00000252108 ZEB1P37275 1124 aaPredicted RBP6.59□□□□□ -1.35
UBE4A-201ENST00000252108 CUX2O14529 1486 aa6.59□□□□□ -1.35
UBE4A-201ENST00000252108 LRRIQ1Q96JM4 1722 aa6.58□□□□□ -1.36
UBE4A-201ENST00000252108 ABCA5Q8WWZ7 1642 aa6.58□□□□□ -1.36
UBE4A-201ENST00000252108 MAP3K1Q13233 1512 aa6.57□□□□□ -1.36
UBE4A-201ENST00000252108 CFAP43Q8NDM7 1665 aa6.57□□□□□ -1.36
UBE4A-201ENST00000252108 PABPN1Q86U42 306 aaKnown RBP eCLIP6.56□□□□□ -1.36
UBE4A-201ENST00000252108 PCGF6Q9BYE7 350 aa6.56□□□□□ -1.36
UBE4A-201ENST00000252108 DNMBPQ6XZF7 1577 aa6.55□□□□□ -1.36
UBE4A-201ENST00000252108 VPS8Q8N3P4 1428 aa6.55□□□□□ -1.36
UBE4A-201ENST00000252108 CLIP1P30622 1438 aa6.55□□□□□ -1.36
UBE4A-201ENST00000252108 TARBP1Q13395 1621 aaKnown RBP6.53□□□□□ -1.36
UBE4A-201ENST00000252108 ABCA10Q8WWZ4 1543 aa6.53□□□□□ -1.36
UBE4A-201ENST00000252108 CTTNBP2Q8WZ74 1663 aa6.53□□□□□ -1.36
UBE4A-201ENST00000252108 SAMD9Q5K651 1589 aa6.53□□□□□ -1.36
UBE4A-201ENST00000252108 LAMC3Q9Y6N6 1575 aa6.53□□□□□ -1.36
UBE4A-201ENST00000252108 CSRNP3Q8WYN3 585 aa6.52□□□□□ -1.37
UBE4A-201ENST00000252108 CUL7Q14999 1698 aa6.52□□□□□ -1.37
UBE4A-201ENST00000252108 ARHGAP35Q9NRY4 1499 aa6.52□□□□□ -1.37
UBE4A-201ENST00000252108 CADPSQ9ULU8 1353 aa6.5□□□□□ -1.37
UBE4A-201ENST00000252108 PPARGC1BQ86YN6 1023 aaKnown RBP6.49□□□□□ -1.37
UBE4A-201ENST00000252108 RRBP1Q9P2E9 1410 aaKnown RBP6.49□□□□□ -1.37
UBE4A-201ENST00000252108 KIF21AQ7Z4S6 1674 aa6.49□□□□□ -1.37
UBE4A-201ENST00000252108 FGD5Q6ZNL6 1462 aa6.49□□□□□ -1.37
UBE4A-201ENST00000252108 MYT1Q01538 1121 aa6.49□□□□□ -1.37
UBE4A-201ENST00000252108 URB2Q14146 1524 aaKnown RBP6.48□□□□□ -1.37
UBE4A-201ENST00000252108 TOPBP1Q92547 1522 aa6.48□□□□□ -1.37
UBE4A-201ENST00000252108 TIAM1Q13009 1591 aa6.47□□□□□ -1.37
UBE4A-201ENST00000252108 IGF1RP08069 1367 aa6.47□□□□□ -1.37
UBE4A-201ENST00000252108 ARHGEF11O15085 1522 aa6.47□□□□□ -1.37
UBE4A-201ENST00000252108 POLA1P09884 1462 aaPredicted RBP6.47□□□□□ -1.37
UBE4A-201ENST00000252108 SNAPC4Q5SXM2 1469 aa6.46□□□□□ -1.38
UBE4A-201ENST00000252108 AQRO60306 1485 aaKnown RBP eCLIP6.45□□□□□ -1.384e-7■■■□□ 18.4
UBE4A-201ENST00000252108 PBRM1Q86U86 1689 aa6.45□□□□□ -1.38
UBE4A-201ENST00000252108 FANCD2Q9BXW9 1451 aa6.44□□□□□ -1.38
UBE4A-201ENST00000252108 KIF27Q86VH2 1401 aa6.44□□□□□ -1.38
UBE4A-201ENST00000252108 EFCAB5A4FU69 1503 aa6.44□□□□□ -1.38
UBE4A-201ENST00000252108 PCF11O94913 1555 aaKnown RBP6.44□□□□□ -1.38
UBE4A-201ENST00000252108 THOC2Q8NI27 1593 aaKnown RBP6.43□□□□□ -1.38
UBE4A-201ENST00000252108 NESP48681 1621 aa6.42□□□□□ -1.38
UBE4A-201ENST00000252108 MAPKBP1O60336 1514 aa6.41□□□□□ -1.38
UBE4A-201ENST00000252108 ADAMTS12P58397 1594 aa6.4□□□□□ -1.39
UBE4A-201ENST00000252108 FAM9AQ8IZU1 332 aaPredicted RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 776.6 ms