Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.81■□□□□ 0.6
CCNFP41002 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.81■□□□□ 0.6
CCNFP41002 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.81■□□□□ 0.6
CCNFP41002 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNFP41002 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
CCNFP41002 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNFP41002 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNFP41002 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCNFP41002 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNFP41002 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CCNFP41002 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNFP41002 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNFP41002 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNFP41002 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.81■□□□□ 0.6
CCNFP41002 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.8■□□□□ 0.6
CCNFP41002 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.8■□□□□ 0.6
CCNFP41002 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.8■□□□□ 0.6
CCNFP41002 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.8■□□□□ 0.6
CCNFP41002 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.8■□□□□ 0.6
CCNFP41002 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.8■□□□□ 0.6
CCNFP41002 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.8■□□□□ 0.6
CCNFP41002 AC233702.5-201ENST00000584107 538 ntBASIC18.8■□□□□ 0.6
CCNFP41002 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.8■□□□□ 0.6
CCNFP41002 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCNFP41002 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCNFP41002 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.8■□□□□ 0.6
CCNFP41002 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.8■□□□□ 0.6
CCNFP41002 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.8■□□□□ 0.6
CCNFP41002 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.8■□□□□ 0.6
CCNFP41002 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNFP41002 MTMR9LP-203ENST00000426597 1545 ntBASIC18.79■□□□□ 0.6
CCNFP41002 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.79■□□□□ 0.6
CCNFP41002 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.79■□□□□ 0.6
CCNFP41002 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCNFP41002 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCNFP41002 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.79■□□□□ 0.6
CCNFP41002 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.79■□□□□ 0.6
CCNFP41002 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 RPS2P4-201ENST00000476944 856 ntBASIC18.79■□□□□ 0.6
CCNFP41002 AC008550.1-201ENST00000511500 884 ntBASIC18.79■□□□□ 0.6
CCNFP41002 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.79■□□□□ 0.6
CCNFP41002 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.79■□□□□ 0.6
CCNFP41002 AC026271.3-201ENST00000571884 352 ntBASIC18.79■□□□□ 0.6
CCNFP41002 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.79■□□□□ 0.6
CCNFP41002 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.79■□□□□ 0.6
CCNFP41002 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNFP41002 AP000997.3-201ENST00000623333 2250 ntBASIC18.79■□□□□ 0.6
CCNFP41002 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.79■□□□□ 0.6
CCNFP41002 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 AC008764.6-201ENST00000595909 2069 ntBASIC18.78■□□□□ 0.6
CCNFP41002 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCNFP41002 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNFP41002 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.78■□□□□ 0.6
CCNFP41002 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.78■□□□□ 0.6
CCNFP41002 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CCNFP41002 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.78■□□□□ 0.6
CCNFP41002 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCNFP41002 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNFP41002 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNFP41002 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNFP41002 CR392000.1-201ENST00000624770 1228 ntBASIC18.78■□□□□ 0.6
CCNFP41002 AL031985.4-201ENST00000642138 673 ntBASIC18.78■□□□□ 0.6
CCNFP41002 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNFP41002 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms