Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HPS3Q969F9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
HPS3Q969F9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HPS3Q969F9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HPS3Q969F9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
HPS3Q969F9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.75■□□□□ 0.91
HPS3Q969F9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HPS3Q969F9 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.75■□□□□ 0.91
HPS3Q969F9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HPS3Q969F9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HPS3Q969F9 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HPS3Q969F9 KRT17P2-201ENST00000300992 1314 ntBASIC20.75■□□□□ 0.91
HPS3Q969F9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HPS3Q969F9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HPS3Q969F9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.74■□□□□ 0.91
HPS3Q969F9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HPS3Q969F9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HPS3Q969F9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
HPS3Q969F9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HPS3Q969F9 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.74■□□□□ 0.91
HPS3Q969F9 AL023803.3-201ENST00000615559 522 ntBASIC20.74■□□□□ 0.91
HPS3Q969F9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.74■□□□□ 0.91
HPS3Q969F9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HPS3Q969F9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HPS3Q969F9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.73■□□□□ 0.91
HPS3Q969F9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
HPS3Q969F9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HPS3Q969F9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HPS3Q969F9 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.73■□□□□ 0.91
HPS3Q969F9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.73■□□□□ 0.91
HPS3Q969F9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 AC090164.3-201ENST00000610780 2143 ntBASIC20.73■□□□□ 0.91
HPS3Q969F9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.73■□□□□ 0.91
HPS3Q969F9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HPS3Q969F9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.73■□□□□ 0.91
HPS3Q969F9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.73■□□□□ 0.91
HPS3Q969F9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.73■□□□□ 0.91
HPS3Q969F9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HPS3Q969F9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.73■□□□□ 0.91
HPS3Q969F9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
HPS3Q969F9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.72■□□□□ 0.91
HPS3Q969F9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
HPS3Q969F9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HPS3Q969F9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.72■□□□□ 0.91
HPS3Q969F9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
HPS3Q969F9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.72■□□□□ 0.91
HPS3Q969F9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.72■□□□□ 0.91
HPS3Q969F9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.72■□□□□ 0.91
HPS3Q969F9 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HPS3Q969F9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HPS3Q969F9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HPS3Q969F9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.71■□□□□ 0.91
HPS3Q969F9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HPS3Q969F9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.71■□□□□ 0.91
HPS3Q969F9 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HPS3Q969F9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HPS3Q969F9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.71■□□□□ 0.91
HPS3Q969F9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
HPS3Q969F9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HPS3Q969F9 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.71■□□□□ 0.91
HPS3Q969F9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.71■□□□□ 0.91
HPS3Q969F9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.71■□□□□ 0.91
HPS3Q969F9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.71■□□□□ 0.91
HPS3Q969F9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
HPS3Q969F9 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HPS3Q969F9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HPS3Q969F9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HPS3Q969F9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
HPS3Q969F9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
HPS3Q969F9 AL109659.2-201ENST00000606809 1674 ntBASIC20.7■□□□□ 0.91
HPS3Q969F9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms