Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 AC005521.1-201ENST00000393351 872 ntBASIC18.09■□□□□ 0.49
LDLRP01130 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.09■□□□□ 0.49
LDLRP01130 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.09■□□□□ 0.49
LDLRP01130 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.09■□□□□ 0.49
LDLRP01130 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LDLRP01130 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.09■□□□□ 0.49
LDLRP01130 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LDLRP01130 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.08■□□□□ 0.49
LDLRP01130 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
LDLRP01130 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LDLRP01130 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LDLRP01130 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
LDLRP01130 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.08■□□□□ 0.49
LDLRP01130 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
LDLRP01130 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LDLRP01130 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.08■□□□□ 0.49
LDLRP01130 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LDLRP01130 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.08■□□□□ 0.48
LDLRP01130 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.08■□□□□ 0.48
LDLRP01130 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.08■□□□□ 0.48
LDLRP01130 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.08■□□□□ 0.48
LDLRP01130 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.08■□□□□ 0.48
LDLRP01130 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.08■□□□□ 0.48
LDLRP01130 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LDLRP01130 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
LDLRP01130 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.08■□□□□ 0.48
LDLRP01130 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDLRP01130 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
LDLRP01130 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.07■□□□□ 0.48
LDLRP01130 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LDLRP01130 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LDLRP01130 AC020916.1-201ENST00000587762 1774 ntBASIC18.07■□□□□ 0.48
LDLRP01130 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
LDLRP01130 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
LDLRP01130 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.07■□□□□ 0.48
LDLRP01130 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.07■□□□□ 0.48
LDLRP01130 AF186192.3-201ENST00000583427 947 ntBASIC18.07■□□□□ 0.48
LDLRP01130 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.07■□□□□ 0.48
LDLRP01130 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.07■□□□□ 0.48
LDLRP01130 AL512353.2-201ENST00000448759 1962 ntBASIC18.07■□□□□ 0.48
LDLRP01130 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.07■□□□□ 0.48
LDLRP01130 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.07■□□□□ 0.48
LDLRP01130 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.07■□□□□ 0.48
LDLRP01130 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.07■□□□□ 0.48
LDLRP01130 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.07■□□□□ 0.48
LDLRP01130 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDLRP01130 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.06■□□□□ 0.48
LDLRP01130 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
LDLRP01130 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LDLRP01130 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms