RNA–Protein interactions for RNA: ENST00000394181.6

CLDND1-203, Transcript of claudin domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene CLDND1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-203ENST00000394181 NISCHQ9Y2I1 1504 aa42.63■■■■■ 4.42
CLDND1-203ENST00000394181 CCDC180Q9P1Z9 1646 aa36.86■■■■□ 3.49
CLDND1-203ENST00000394181 ZCCHC6Q5VYS8 1495 aaKnown RBP35.83■■■■□ 3.33
CLDND1-203ENST00000394181 DCAF8L2P0C7V8 631 aa35.46■■■■□ 3.27
CLDND1-203ENST00000394181 SHROOM4Q9ULL8 1493 aa35.26■■■■□ 3.23
CLDND1-203ENST00000394181 DCAF1Q9Y4B6 1507 aa35.08■■■■□ 3.21
CLDND1-203ENST00000394181 ABCC9O60706 1549 aa35.03■■■■□ 3.2
CLDND1-203ENST00000394181 MYO15BQ96JP2 1530 aa34.54■■■■□ 3.12
CLDND1-203ENST00000394181 NACADO15069 1562 aa34.35■■■■□ 3.09
CLDND1-203ENST00000394181 SCRIBQ14160 1630 aa34.21■■■■□ 3.07
CLDND1-203ENST00000394181 RB1CC1Q8TDY2 1594 aa34.03■■■■□ 3.04
CLDND1-203ENST00000394181 SUPT5HO00267 1087 aaKnown RBP34.01■■■■□ 3.03
CLDND1-203ENST00000394181 UNC13AQ9UPW8 1703 aa33.43■■■□□ 2.94
CLDND1-203ENST00000394181 CECR2Q9BXF3 1484 aa33.28■■■□□ 2.92
CLDND1-203ENST00000394181 RSF1Q96T23 1441 aaPredicted RBP33.25■■■□□ 2.91
CLDND1-203ENST00000394181 PABPN1Q86U42 306 aaKnown RBP eCLIP33.21■■■□□ 2.91
CLDND1-203ENST00000394181 BICRAQ9NZM4 1560 aa33.14■■■□□ 2.9
CLDND1-203ENST00000394181 MROH2BQ7Z745 1585 aa33.05■■■□□ 2.88
CLDND1-203ENST00000394181 BAZ1AQ9NRL2 1556 aaPredicted RBP32.82■■■□□ 2.85
CLDND1-203ENST00000394181 WIZO95785 1651 aa32.77■■■□□ 2.84
CLDND1-203ENST00000394181 SMARCA4P51532 1647 aa32.7■■■□□ 2.82
CLDND1-203ENST00000394181 CHIC1Q5VXU3 224 aa32.59■■■□□ 2.81
CLDND1-203ENST00000394181 TOP2AP11388 1531 aaKnown RBP32.31■■■□□ 2.76
CLDND1-203ENST00000394181 PEG3Q9GZU2 1588 aa32.21■■■□□ 2.75
CLDND1-203ENST00000394181 ATAD2BQ9ULI0 1458 aa32.17■■■□□ 2.74
CLDND1-203ENST00000394181 CCDC88BA6NC98 1476 aa32.12■■■□□ 2.73
CLDND1-203ENST00000394181 EIF4G1Q04637 1599 aaKnown RBP32.09■■■□□ 2.73
CLDND1-203ENST00000394181 SMARCA2P51531 1590 aa32.07■■■□□ 2.73
CLDND1-203ENST00000394181 BAZ1BQ9UIG0 1483 aaKnown RBP31.97■■■□□ 2.71
CLDND1-203ENST00000394181 TRIM41Q8WV44 630 aa31.84■■■□□ 2.69
CLDND1-203ENST00000394181 NCAPD3P42695 1498 aa31.79■■■□□ 2.68
CLDND1-203ENST00000394181 HMGXB3Q12766 1538 aa31.69■■■□□ 2.66
CLDND1-203ENST00000394181 CC2D2AQ9P2K1 1620 aa31.59■■■□□ 2.65
CLDND1-203ENST00000394181 ABCC8Q09428 1581 aa31.57■■■□□ 2.64
CLDND1-203ENST00000394181 LOC105371045A0A1W2PR82 267 aa31.51■■■□□ 2.63
CLDND1-203ENST00000394181 FAM9AQ8IZU1 332 aaPredicted RBP31.44■■■□□ 2.62
CLDND1-203ENST00000394181 WRNQ14191 1432 aaPredicted RBP eCLIP31.24■■■□□ 2.59
CLDND1-203ENST00000394181 CFTRP13569 1480 aa31.18■■■□□ 2.58
CLDND1-203ENST00000394181 SYNJ1O43426 1573 aa31.14■■■□□ 2.57
CLDND1-203ENST00000394181 EHMT2Q96KQ7 1210 aa31.12■■■□□ 2.57
CLDND1-203ENST00000394181 DNAJC5BQ9UF47 199 aa31.1■■■□□ 2.57
CLDND1-203ENST00000394181 SOGA1O94964 1423 aa31.06■■■□□ 2.56
CLDND1-203ENST00000394181 CADPSQ9ULU8 1353 aa31.05■■■□□ 2.56
CLDND1-203ENST00000394181 RUSC2Q8N2Y8 1516 aa30.97■■■□□ 2.55
CLDND1-203ENST00000394181 TOP2BQ02880 1626 aa30.89■■■□□ 2.53
CLDND1-203ENST00000394181 CUX1P39880 1505 aa30.86■■■□□ 2.53
CLDND1-203ENST00000394181 NESP48681 1621 aa30.85■■■□□ 2.53
CLDND1-203ENST00000394181 PRDM2Q13029 1718 aa30.83■■■□□ 2.53
CLDND1-203ENST00000394181 BIVM-ERCC5R4GMW8 1640 aa30.81■■■□□ 2.52
CLDND1-203ENST00000394181 CSRNP3Q8WYN3 585 aa30.79■■■□□ 2.52
CLDND1-203ENST00000394181 EEA1Q15075 1411 aa30.75■■■□□ 2.51
CLDND1-203ENST00000394181 FANCD2Q9BXW9 1451 aa30.72■■■□□ 2.51
CLDND1-203ENST00000394181 LAMC3Q9Y6N6 1575 aa30.6■■■□□ 2.49
CLDND1-203ENST00000394181 UBTFP17480 764 aaKnown RBP30.47■■■□□ 2.47
CLDND1-203ENST00000394181 FGD5Q6ZNL6 1462 aa30.47■■■□□ 2.47
CLDND1-203ENST00000394181 CEP164Q9UPV0 1460 aa30.45■■■□□ 2.46
CLDND1-203ENST00000394181 GOLGA3Q08378 1498 aa30.44■■■□□ 2.46
CLDND1-203ENST00000394181 PDS5BQ9NTI5 1447 aa30.43■■■□□ 2.46
CLDND1-203ENST00000394181 TNIKQ9UKE5 1360 aa30.42■■■□□ 2.46
CLDND1-203ENST00000394181 TOPBP1Q92547 1522 aa30.4■■■□□ 2.46
CLDND1-203ENST00000394181 DNMBPQ6XZF7 1577 aa30.39■■■□□ 2.46
CLDND1-203ENST00000394181 KIF27Q86VH2 1401 aa30.39■■■□□ 2.46
CLDND1-203ENST00000394181 KIF21BO75037 1637 aa30.38■■■□□ 2.45
CLDND1-203ENST00000394181 RAPGEF2Q9Y4G8 1499 aa30.36■■■□□ 2.45
CLDND1-203ENST00000394181 URB2Q14146 1524 aaKnown RBP30.36■■■□□ 2.45
CLDND1-203ENST00000394181 CUX2O14529 1486 aa30.34■■■□□ 2.45
CLDND1-203ENST00000394181 CEP162Q5TB80 1403 aa30.33■■■□□ 2.45
CLDND1-203ENST00000394181 KIF21AQ7Z4S6 1674 aa30.32■■■□□ 2.45
CLDND1-203ENST00000394181 RAD54L2Q9Y4B4 1467 aa30.3■■■□□ 2.44
CLDND1-203ENST00000394181 POLA1P09884 1462 aaPredicted RBP30.29■■■□□ 2.44
CLDND1-203ENST00000394181 PRXQ9BXM0 1461 aa30.27■■■□□ 2.44
CLDND1-203ENST00000394181 PCGF6Q9BYE7 350 aa30.22■■■□□ 2.43
CLDND1-203ENST00000394181 IGF1RP08069 1367 aa30.21■■■□□ 2.43
CLDND1-203ENST00000394181 ABCA10Q8WWZ4 1543 aa30.14■■■□□ 2.41
CLDND1-203ENST00000394181 ERICH3Q5RHP9 1530 aa30.12■■■□□ 2.41
CLDND1-203ENST00000394181 RANGAP1P46060 587 aaPredicted RBP30.11■■■□□ 2.41
CLDND1-203ENST00000394181 PPARGC1BQ86YN6 1023 aaKnown RBP30.1■■■□□ 2.41
CLDND1-203ENST00000394181 MRC2Q9UBG0 1479 aa30.03■■■□□ 2.4
CLDND1-203ENST00000394181 CLIP1P30622 1438 aa30.03■■■□□ 2.4
CLDND1-203ENST00000394181 CARMIL1Q5VZK9 1371 aa30.02■■■□□ 2.4
CLDND1-203ENST00000394181 TRIM26Q12899 539 aaPredicted RBP30.01■■■□□ 2.39
CLDND1-203ENST00000394181 TDRD9Q8NDG6 1382 aaKnown RBP30.01■■■□□ 2.39
CLDND1-203ENST00000394181 WDR97A6NE52 1622 aa29.96■■■□□ 2.39
CLDND1-203ENST00000394181 ERCC6Q03468 1493 aa29.91■■■□□ 2.38
CLDND1-203ENST00000394181 TARBP1Q13395 1621 aaKnown RBP29.9■■■□□ 2.38
CLDND1-203ENST00000394181 GAPVD1Q14C86 1478 aa29.85■■■□□ 2.37
CLDND1-203ENST00000394181 ABCA5Q8WWZ7 1642 aa29.85■■■□□ 2.37
CLDND1-203ENST00000394181 WDR62O43379 1518 aa29.84■■■□□ 2.37
CLDND1-203ENST00000394181 TTBK1Q5TCY1 1321 aaPredicted RBP29.8■■■□□ 2.36
CLDND1-203ENST00000394181 AQRO60306 1485 aaKnown RBP eCLIP29.76■■■□□ 2.361e-6■■■■□ 26.1
CLDND1-203ENST00000394181 VPS8Q8N3P4 1428 aa29.75■■■□□ 2.35
CLDND1-203ENST00000394181 CUL7Q14999 1698 aa29.73■■■□□ 2.35
CLDND1-203ENST00000394181 ARAP1Q96P48 1450 aa29.73■■■□□ 2.35
CLDND1-203ENST00000394181 THOC2Q8NI27 1593 aaKnown RBP29.72■■■□□ 2.35
CLDND1-203ENST00000394181 ZNF608Q9ULD9 1512 aaPredicted RBP29.7■■■□□ 2.35
CLDND1-203ENST00000394181 ARHGAP35Q9NRY4 1499 aa29.68■■■□□ 2.34
CLDND1-203ENST00000394181 IFT140Q96RY7 1462 aa29.68■■■□□ 2.34
CLDND1-203ENST00000394181 PBRM1Q86U86 1689 aa29.58■■■□□ 2.33
CLDND1-203ENST00000394181 GRIN2BQ13224 1484 aa29.54■■■□□ 2.32
CLDND1-203ENST00000394181 P3H3Q8IVL6 736 aa29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms