Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC15.28■□□□□ 0.04
SSSCA1O60232 RER1-204ENST00000378518 522 ntTSL 3 BASIC15.28■□□□□ 0.04
SSSCA1O60232 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSSCA1O60232 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSSCA1O60232 AC093787.1-201ENST00000450396 207 ntBASIC15.28■□□□□ 0.04
SSSCA1O60232 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SSSCA1O60232 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
SSSCA1O60232 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSSCA1O60232 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSSCA1O60232 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
SSSCA1O60232 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC15.28■□□□□ 0.04
SSSCA1O60232 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
SSSCA1O60232 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSSCA1O60232 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.28■□□□□ 0.04
SSSCA1O60232 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SSSCA1O60232 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SSSCA1O60232 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.27■□□□□ 0.04
SSSCA1O60232 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SSSCA1O60232 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.27■□□□□ 0.04
SSSCA1O60232 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SSSCA1O60232 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.27■□□□□ 0.04
SSSCA1O60232 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC15.27■□□□□ 0.04
SSSCA1O60232 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.27■□□□□ 0.04
SSSCA1O60232 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
SSSCA1O60232 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SSSCA1O60232 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSSCA1O60232 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SSSCA1O60232 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC15.27■□□□□ 0.04
SSSCA1O60232 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.27■□□□□ 0.03
SSSCA1O60232 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.27■□□□□ 0.03
SSSCA1O60232 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.27■□□□□ 0.03
SSSCA1O60232 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 AC106820.2-201ENST00000563775 3264 ntBASIC15.27■□□□□ 0.03
SSSCA1O60232 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SSSCA1O60232 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
SSSCA1O60232 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
SSSCA1O60232 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
SSSCA1O60232 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.27■□□□□ 0.03
SSSCA1O60232 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSSCA1O60232 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC15.26■□□□□ 0.03
SSSCA1O60232 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SSSCA1O60232 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.26■□□□□ 0.03
SSSCA1O60232 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SSSCA1O60232 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SSSCA1O60232 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.26■□□□□ 0.03
SSSCA1O60232 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC15.26■□□□□ 0.03
SSSCA1O60232 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SSSCA1O60232 AC073210.2-201ENST00000430369 194 ntBASIC15.26■□□□□ 0.03
SSSCA1O60232 LGR4-203ENST00000480977 492 ntTSL 2 BASIC15.26■□□□□ 0.03
SSSCA1O60232 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC15.26■□□□□ 0.03
SSSCA1O60232 AC005829.2-201ENST00000571422 1056 ntBASIC15.26■□□□□ 0.03
SSSCA1O60232 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SSSCA1O60232 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SSSCA1O60232 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.26■□□□□ 0.03
SSSCA1O60232 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SSSCA1O60232 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SSSCA1O60232 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.26■□□□□ 0.03
SSSCA1O60232 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSSCA1O60232 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms