Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 AC239809.2-201ENST00000415381 517 ntBASIC14.06□□□□□ -0.16
LINC00477Q96M19 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 RNA5SP413-201ENST00000516373 109 ntBASIC14.06□□□□□ -0.16
LINC00477Q96M19 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 AL445675.2-201ENST00000620291 557 ntBASIC14.06□□□□□ -0.16
LINC00477Q96M19 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.06□□□□□ -0.16
LINC00477Q96M19 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00477Q96M19 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 KRASP1-201ENST00000407852 552 ntBASIC14.05□□□□□ -0.16
LINC00477Q96M19 POU5F1P3-201ENST00000428824 1078 ntBASIC14.05□□□□□ -0.16
LINC00477Q96M19 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 Z85996.1-201ENST00000494644 937 ntBASIC14.05□□□□□ -0.16
LINC00477Q96M19 AL023875.1-201ENST00000640777 796 ntBASIC14.05□□□□□ -0.16
LINC00477Q96M19 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.05□□□□□ -0.16
LINC00477Q96M19 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LINC00477Q96M19 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00477Q96M19 AL162741.1-201ENST00000565563 1558 ntBASIC14.05□□□□□ -0.16
LINC00477Q96M19 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AL354751.1-201ENST00000412768 1863 ntBASIC14.04□□□□□ -0.16
LINC00477Q96M19 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 LY6E-205ENST00000519611 635 ntTSL 3 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 KLF13-207ENST00000560473 489 ntTSL 3 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AC110285.5-201ENST00000611501 352 ntBASIC14.04□□□□□ -0.16
LINC00477Q96M19 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms