Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.284e-6■□□□□ 11.3
DDX55Q8NHQ9 ANKRD37-205ENST00000511311 668 ntTSL 27□□□□□ -1.294e-6■□□□□ 11.3
DDX55Q8NHQ9 ANKRD37-202ENST00000506424 519 ntTSL 36.78□□□□□ -1.324e-6■□□□□ 11.3
DDX55Q8NHQ9 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.341e-14■□□□□ 11.3
DDX55Q8NHQ9 IVNS1ABP-206ENST00000475046 1816 ntTSL 26.37□□□□□ -1.392e-8■□□□□ 11.3
DDX55Q8NHQ9 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.411e-14■□□□□ 11.3
DDX55Q8NHQ9 HECTD4-210ENST00000549306 543 ntTSL 25.89□□□□□ -1.474e-6■□□□□ 11.3
DDX55Q8NHQ9 IVNS1ABP-207ENST00000480769 3776 ntTSL 1 (best)4.19□□□□□ -1.742e-8■□□□□ 11.3
DDX55Q8NHQ9 HECTD4-209ENST00000549141 564 ntTSL 24.08□□□□□ -1.764e-6■□□□□ 11.3
DDX55Q8NHQ9 SDF4-206ENST00000478938 2591 ntTSL 222.58■■□□□ 1.215e-12■□□□□ 11.3
DDX55Q8NHQ9 SDF4-207ENST00000494748 3516 ntTSL 215.9■□□□□ 0.145e-12■□□□□ 11.3
DDX55Q8NHQ9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.483e-6■□□□□ 11.2
DDX55Q8NHQ9 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC21.59■■□□□ 1.053e-6■□□□□ 11.2
DDX55Q8NHQ9 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.26■□□□□ 0.833e-6■□□□□ 11.2
DDX55Q8NHQ9 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.783e-6■□□□□ 11.2
DDX55Q8NHQ9 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.293e-6■□□□□ 11.2
DDX55Q8NHQ9 MYL4-207ENST00000572303 544 ntTSL 313.1□□□□□ -0.312e-11■□□□□ 11.2
DDX55Q8NHQ9 SERPINB6-203ENST00000380524 1495 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.533e-6■□□□□ 11.2
DDX55Q8NHQ9 RABGGTB-201ENST00000319942 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.585e-18■□□□□ 11.2
DDX55Q8NHQ9 SERPINB6-205ENST00000380539 1338 ntAPPRIS P1 TSL 3 BASIC11.22□□□□□ -0.613e-6■□□□□ 11.2
DDX55Q8NHQ9 SERPINB6-202ENST00000380520 3265 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.833e-6■□□□□ 11.2
DDX55Q8NHQ9 RABGGTB-208ENST00000471759 2137 ntTSL 27.17□□□□□ -1.265e-18■□□□□ 11.2
DDX55Q8NHQ9 RABGGTB-203ENST00000459697 1177 ntTSL 26.28□□□□□ -1.45e-18■□□□□ 11.2
DDX55Q8NHQ9 RABGGTB-213ENST00000496055 3863 ntTSL 25.09□□□□□ -1.65e-18■□□□□ 11.2
DDX55Q8NHQ9 NDST1-201ENST00000261797 8030 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.336e-9■□□□□ 11.2
DDX55Q8NHQ9 SSR2-211ENST00000484320 1148 ntTSL 516.96■□□□□ 0.313e-6■□□□□ 11.2
DDX55Q8NHQ9 SSR2-209ENST00000480176 1040 ntTSL 215.62■□□□□ 0.093e-6■□□□□ 11.2
DDX55Q8NHQ9 SSR2-218ENST00000532074 1008 ntTSL 512.49□□□□□ -0.413e-6■□□□□ 11.2
DDX55Q8NHQ9 SSR2-213ENST00000496742 825 ntTSL 3 BASIC10.79□□□□□ -0.683e-6■□□□□ 11.2
DDX55Q8NHQ9 SSR2-201ENST00000295702 1116 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.733e-6■□□□□ 11.2
DDX55Q8NHQ9 SSR2-212ENST00000488179 1712 ntTSL 510.24□□□□□ -0.773e-6■□□□□ 11.2
DDX55Q8NHQ9 SSR2-215ENST00000529008 849 ntTSL 5 BASIC10.18□□□□□ -0.783e-6■□□□□ 11.2
DDX55Q8NHQ9 AP000781.2-203ENST00000528835 533 ntTSL 320.92■□□□□ 0.944e-7■□□□□ 11.2
DDX55Q8NHQ9 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.584e-7■□□□□ 11.2
DDX55Q8NHQ9 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.414e-7■□□□□ 11.2
DDX55Q8NHQ9 PRG2-203ENST00000530105 1048 ntTSL 516.22■□□□□ 0.194e-7■□□□□ 11.2
DDX55Q8NHQ9 AP000781.2-201ENST00000534081 1639 ntTSL 215.97■□□□□ 0.154e-7■□□□□ 11.2
DDX55Q8NHQ9 PRG2-204ENST00000533605 1350 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.24e-7■□□□□ 11.2
DDX55Q8NHQ9 AP000781.2-202ENST00000529411 681 ntAPPRIS P1 TSL 4 BASIC12.29□□□□□ -0.444e-7■□□□□ 11.2
DDX55Q8NHQ9 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.067e-8■□□□□ 11.2
DDX55Q8NHQ9 MACROD1-207ENST00000543422 403 ntTSL 317.13■□□□□ 0.337e-8■□□□□ 11.2
DDX55Q8NHQ9 GPX3-204ENST00000520059 316 ntTSL 313.15□□□□□ -0.31e-17■□□□□ 11.2
DDX55Q8NHQ9 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.442e-6■□□□□ 11.2
DDX55Q8NHQ9 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.092e-6■□□□□ 11.2
DDX55Q8NHQ9 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.6■□□□□ 0.092e-6■□□□□ 11.2
DDX55Q8NHQ9 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC14.3□□□□□ -0.122e-6■□□□□ 11.2
DDX55Q8NHQ9 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC14.15□□□□□ -0.142e-6■□□□□ 11.2
DDX55Q8NHQ9 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC13.18□□□□□ -0.32e-6■□□□□ 11.2
DDX55Q8NHQ9 ACIN1-223ENST00000605057 4474 ntTSL 1 (best) BASIC12.28□□□□□ -0.442e-6■□□□□ 11.2
DDX55Q8NHQ9 ACIN1-206ENST00000473758 3540 ntTSL 1 (best)12.03□□□□□ -0.482e-6■□□□□ 11.2
DDX55Q8NHQ9 TRIM28-207ENST00000597136 1552 ntTSL 217.96■□□□□ 0.473e-21■□□□□ 11.2
DDX55Q8NHQ9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.7■□□□□ 0.742e-32■□□□□ 11.2
DDX55Q8NHQ9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.32■□□□□ 0.522e-32■□□□□ 11.2
DDX55Q8NHQ9 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC15□□□□□ -0.012e-32■□□□□ 11.2
DDX55Q8NHQ9 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC9.3□□□□□ -0.922e-32■□□□□ 11.2
DDX55Q8NHQ9 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.162e-32■□□□□ 11.2
DDX55Q8NHQ9 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.16□□□□□ -1.262e-32■□□□□ 11.2
DDX55Q8NHQ9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.25□□□□□ -1.732e-32■□□□□ 11.2
DDX55Q8NHQ9 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.06□□□□□ -1.762e-32■□□□□ 11.2
DDX55Q8NHQ9 SPTAN1-211ENST00000625980 1713 ntTSL 214.83□□□□□ -0.042e-19■□□□□ 11.2
DDX55Q8NHQ9 SPTAN1-229ENST00000636010 1472 ntTSL 513.99□□□□□ -0.172e-19■□□□□ 11.2
DDX55Q8NHQ9 SPTAN1-220ENST00000630147 785 ntTSL 213.34□□□□□ -0.272e-19■□□□□ 11.2
DDX55Q8NHQ9 SPTAN1-221ENST00000630763 1503 ntTSL 211.64□□□□□ -0.552e-19■□□□□ 11.2
DDX55Q8NHQ9 SPTAN1-201ENST00000358161 7794 ntTSL 1 (best) BASIC11.09□□□□□ -0.632e-19■□□□□ 11.2
DDX55Q8NHQ9 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.752e-19■□□□□ 11.2
DDX55Q8NHQ9 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.82e-19■□□□□ 11.2
DDX55Q8NHQ9 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC9.3□□□□□ -0.922e-19■□□□□ 11.2
DDX55Q8NHQ9 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.464e-17■□□□□ 11.2
DDX55Q8NHQ9 SRP14-204ENST00000558720 780 ntTSL 2 BASIC16.63■□□□□ 0.254e-17■□□□□ 11.2
DDX55Q8NHQ9 SRP14-203ENST00000558527 791 ntTSL 216.11■□□□□ 0.174e-17■□□□□ 11.2
DDX55Q8NHQ9 LAMA5-212ENST00000495695 780 ntTSL 225.1■■□□□ 1.614e-8■□□□□ 11.2
DDX55Q8NHQ9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.314e-21■□□□□ 11.2
DDX55Q8NHQ9 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.34e-21■□□□□ 11.2
DDX55Q8NHQ9 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.214e-21■□□□□ 11.2
DDX55Q8NHQ9 RPS9-210ENST00000460761 644 ntTSL 217.7■□□□□ 0.423e-20■□□□□ 11.2
DDX55Q8NHQ9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC26.02■■□□□ 1.761e-14■□□□□ 11.2
DDX55Q8NHQ9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC24.5■■□□□ 1.511e-14■□□□□ 11.2
DDX55Q8NHQ9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC23.83■■□□□ 1.411e-14■□□□□ 11.2
DDX55Q8NHQ9 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC22.82■■□□□ 1.249e-7■□□□□ 11.2
DDX55Q8NHQ9 RPS15-211ENST00000592700 1602 ntTSL 221.66■■□□□ 1.061e-14■□□□□ 11.2
DDX55Q8NHQ9 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.2■□□□□ 0.989e-7■□□□□ 11.2
DDX55Q8NHQ9 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.9■□□□□ 0.941e-14■□□□□ 11.2
DDX55Q8NHQ9 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.33■□□□□ 0.681e-14■□□□□ 11.2
DDX55Q8NHQ9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.561e-7■□□□□ 11.2
DDX55Q8NHQ9 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.13■□□□□ 0.491e-7■□□□□ 11.2
DDX55Q8NHQ9 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.08■□□□□ 0.481e-14■□□□□ 11.2
DDX55Q8NHQ9 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.08■□□□□ 0.481e-14■□□□□ 11.2
DDX55Q8NHQ9 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.481e-14■□□□□ 11.2
DDX55Q8NHQ9 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.08■□□□□ 0.481e-14■□□□□ 11.2
DDX55Q8NHQ9 RPS15-204ENST00000586656 436 ntTSL 318.02■□□□□ 0.481e-14■□□□□ 11.2
DDX55Q8NHQ9 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.57■□□□□ 0.41e-14■□□□□ 11.2
DDX55Q8NHQ9 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.021e-14■□□□□ 11.2
DDX55Q8NHQ9 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC14.13□□□□□ -0.151e-14■□□□□ 11.2
DDX55Q8NHQ9 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.151e-14■□□□□ 11.2
DDX55Q8NHQ9 HIRA-203ENST00000452818 453 ntTSL 514.04□□□□□ -0.169e-7■□□□□ 11.2
DDX55Q8NHQ9 C22orf39-204ENST00000509549 2979 ntTSL 213.82□□□□□ -0.29e-7■□□□□ 11.2
DDX55Q8NHQ9 NRDC-203ENST00000440943 1660 ntTSL 59.8□□□□□ -0.841e-14■□□□□ 11.2
DDX55Q8NHQ9 NRDC-210ENST00000485608 3149 ntTSL 27.83□□□□□ -1.161e-14■□□□□ 11.2
DDX55Q8NHQ9 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.411e-14■□□□□ 11.2
DDX55Q8NHQ9 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.224e-8■□□□□ 11.2
Retrieved 100 of 15,504 protein–RNA pairs in 94.9 ms