Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 BX323043.1-201ENST00000641006 1765 ntBASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AP000347.1-202ENST00000435868 847 ntBASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC091390.4-202ENST00000476426 537 ntBASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC005082.1-201ENST00000413042 2259 ntBASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 RCC2P6-201ENST00000526625 1557 ntBASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 KRT8P11-201ENST00000409686 1436 ntBASIC25.29■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC009113.1-201ENST00000570267 2443 ntBASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 MESTP1-201ENST00000404287 994 ntBASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 DUT-205ENST00000558813 769 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC004263.2-201ENST00000617183 678 ntBASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AL691432.3-201ENST00000621860 400 ntBASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms