Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.9■□□□□ 0.78
SMCO4Q9NRQ5 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMCO4Q9NRQ5 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMCO4Q9NRQ5 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMCO4Q9NRQ5 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMCO4Q9NRQ5 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMCO4Q9NRQ5 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMCO4Q9NRQ5 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMCO4Q9NRQ5 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 AC079834.2-201ENST00000609776 1949 ntBASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMCO4Q9NRQ5 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMCO4Q9NRQ5 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.87■□□□□ 0.77
SMCO4Q9NRQ5 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SMCO4Q9NRQ5 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMCO4Q9NRQ5 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMCO4Q9NRQ5 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMCO4Q9NRQ5 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMCO4Q9NRQ5 CLDN5-201ENST00000403084 2357 ntBASIC19.86■□□□□ 0.77
SMCO4Q9NRQ5 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SMCO4Q9NRQ5 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.86■□□□□ 0.77
SMCO4Q9NRQ5 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMCO4Q9NRQ5 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
SMCO4Q9NRQ5 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMCO4Q9NRQ5 LINC01003-201ENST00000564834 1764 ntBASIC19.85■□□□□ 0.77
SMCO4Q9NRQ5 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMCO4Q9NRQ5 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMCO4Q9NRQ5 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO4Q9NRQ5 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.83■□□□□ 0.77
SMCO4Q9NRQ5 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.83■□□□□ 0.77
SMCO4Q9NRQ5 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMCO4Q9NRQ5 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMCO4Q9NRQ5 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.83■□□□□ 0.76
SMCO4Q9NRQ5 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMCO4Q9NRQ5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.82■□□□□ 0.76
SMCO4Q9NRQ5 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.82■□□□□ 0.76
SMCO4Q9NRQ5 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMCO4Q9NRQ5 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.8■□□□□ 0.76
SMCO4Q9NRQ5 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMCO4Q9NRQ5 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.8■□□□□ 0.76
SMCO4Q9NRQ5 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMCO4Q9NRQ5 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.79■□□□□ 0.76
SMCO4Q9NRQ5 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMCO4Q9NRQ5 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMCO4Q9NRQ5 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SMCO4Q9NRQ5 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMCO4Q9NRQ5 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO4Q9NRQ5 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO4Q9NRQ5 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO4Q9NRQ5 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SMCO4Q9NRQ5 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
SMCO4Q9NRQ5 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMCO4Q9NRQ5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMCO4Q9NRQ5 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMCO4Q9NRQ5 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
SMCO4Q9NRQ5 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMCO4Q9NRQ5 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.77■□□□□ 0.76
SMCO4Q9NRQ5 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMCO4Q9NRQ5 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMCO4Q9NRQ5 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.76■□□□□ 0.75
SMCO4Q9NRQ5 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMCO4Q9NRQ5 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.76■□□□□ 0.75
SMCO4Q9NRQ5 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMCO4Q9NRQ5 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMCO4Q9NRQ5 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SMCO4Q9NRQ5 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.75■□□□□ 0.75
SMCO4Q9NRQ5 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMCO4Q9NRQ5 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMCO4Q9NRQ5 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMCO4Q9NRQ5 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMCO4Q9NRQ5 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMCO4Q9NRQ5 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMCO4Q9NRQ5 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMCO4Q9NRQ5 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMCO4Q9NRQ5 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMCO4Q9NRQ5 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.72■□□□□ 0.75
SMCO4Q9NRQ5 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMCO4Q9NRQ5 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMCO4Q9NRQ5 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMCO4Q9NRQ5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMCO4Q9NRQ5 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SMCO4Q9NRQ5 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.71■□□□□ 0.75
SMCO4Q9NRQ5 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMCO4Q9NRQ5 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SMCO4Q9NRQ5 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SMCO4Q9NRQ5 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMCO4Q9NRQ5 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.69■□□□□ 0.74
SMCO4Q9NRQ5 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
SMCO4Q9NRQ5 DUSP8P4-201ENST00000399538 1761 ntBASIC19.69■□□□□ 0.74
SMCO4Q9NRQ5 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.69■□□□□ 0.74
SMCO4Q9NRQ5 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMCO4Q9NRQ5 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMCO4Q9NRQ5 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms