Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MT-ND4P03905 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
MT-ND4P03905 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
MT-ND4P03905 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.7■■□□□ 1.06
MT-ND4P03905 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND4P03905 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND4P03905 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND4P03905 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND4P03905 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
MT-ND4P03905 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND4P03905 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.69■■□□□ 1.06
MT-ND4P03905 AP004833.2-201ENST00000532228 1454 ntBASIC21.69■■□□□ 1.06
MT-ND4P03905 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MT-ND4P03905 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
MT-ND4P03905 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.69■■□□□ 1.06
MT-ND4P03905 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MT-ND4P03905 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
MT-ND4P03905 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
MT-ND4P03905 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
MT-ND4P03905 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MT-ND4P03905 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MT-ND4P03905 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND4P03905 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND4P03905 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MT-ND4P03905 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND4P03905 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MT-ND4P03905 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.65■■□□□ 1.06
MT-ND4P03905 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MT-ND4P03905 MIR762-201ENST00000390236 83 ntBASIC21.65■■□□□ 1.06
MT-ND4P03905 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
MT-ND4P03905 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MT-ND4P03905 AC093323.1-202ENST00000635031 2045 ntBASIC21.65■■□□□ 1.06
MT-ND4P03905 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.64■■□□□ 1.06
MT-ND4P03905 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MT-ND4P03905 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MT-ND4P03905 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
MT-ND4P03905 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
MT-ND4P03905 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MT-ND4P03905 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
MT-ND4P03905 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MT-ND4P03905 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.64■■□□□ 1.05
MT-ND4P03905 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MT-ND4P03905 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
MT-ND4P03905 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
MT-ND4P03905 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.63■■□□□ 1.05
MT-ND4P03905 AC145676.1-201ENST00000514988 2004 ntBASIC21.63■■□□□ 1.05
MT-ND4P03905 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.62■■□□□ 1.05
MT-ND4P03905 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
MT-ND4P03905 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MT-ND4P03905 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.61■■□□□ 1.05
MT-ND4P03905 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
MT-ND4P03905 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.61■■□□□ 1.05
MT-ND4P03905 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MT-ND4P03905 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.6■■□□□ 1.05
MT-ND4P03905 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.6■■□□□ 1.05
MT-ND4P03905 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.6■■□□□ 1.05
MT-ND4P03905 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MT-ND4P03905 AC127502.1-201ENST00000399971 1502 ntBASIC21.6■■□□□ 1.05
MT-ND4P03905 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.59■■□□□ 1.05
MT-ND4P03905 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MT-ND4P03905 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MT-ND4P03905 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MT-ND4P03905 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.59■■□□□ 1.05
MT-ND4P03905 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MT-ND4P03905 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MT-ND4P03905 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
MT-ND4P03905 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MT-ND4P03905 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.58■■□□□ 1.05
MT-ND4P03905 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
MT-ND4P03905 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.58■■□□□ 1.05
MT-ND4P03905 SUZ12P1-203ENST00000578195 985 ntBASIC21.58■■□□□ 1.05
MT-ND4P03905 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MT-ND4P03905 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.57■■□□□ 1.04
MT-ND4P03905 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MT-ND4P03905 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MT-ND4P03905 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MT-ND4P03905 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MT-ND4P03905 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MT-ND4P03905 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.56■■□□□ 1.04
MT-ND4P03905 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MT-ND4P03905 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MT-ND4P03905 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
MT-ND4P03905 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MT-ND4P03905 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.55■■□□□ 1.04
MT-ND4P03905 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
MT-ND4P03905 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
MT-ND4P03905 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.54■■□□□ 1.04
MT-ND4P03905 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MT-ND4P03905 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MT-ND4P03905 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
MT-ND4P03905 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MT-ND4P03905 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MT-ND4P03905 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
MT-ND4P03905 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MT-ND4P03905 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MT-ND4P03905 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.53■■□□□ 1.04
MT-ND4P03905 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
MT-ND4P03905 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MT-ND4P03905 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
MT-ND4P03905 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms