RNA–Protein interactions for RNA: YPR173C

VPS4, Transcript of AAA-ATPase involved in multivesicular body (MVB) protein sorting, yeastyeast

Gene VPS4, Length 1,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS4YPR173C DRS1P32892 752 aaKnown RBP13.01□□□□□ -0.33
VPS4YPR173C MTC1P47018 478 aaKnown RBP12.91□□□□□ -0.34
VPS4YPR173C FAP1P53971 965 aa11.83□□□□□ -0.52
VPS4YPR173C BFR2Q06631 534 aaKnown RBP11.29□□□□□ -0.6
VPS4YPR173C PRY3P47033 881 aa11.18□□□□□ -0.62
VPS4YPR173C DIP2Q12220 943 aaPredicted RBP11.05□□□□□ -0.64
VPS4YPR173C AVT3P36062 692 aa10.89□□□□□ -0.67
VPS4YPR173C PRI1P10363 409 aa10.7□□□□□ -0.7
VPS4YPR173C AAD16Q02895 342 aa10.64□□□□□ -0.71
VPS4YPR173C TFA1P36100 482 aa10.62□□□□□ -0.71
VPS4YPR173C YCK3P39962 524 aa10.59□□□□□ -0.71
VPS4YPR173C ISW2Q08773 1120 aa10.51□□□□□ -0.73
VPS4YPR173C HAA1Q12753 694 aaKnown RBP10.45□□□□□ -0.74
VPS4YPR173C RSE1Q04693 1361 aaKnown RBP10.41□□□□□ -0.74
VPS4YPR173C RPG1P38249 964 aaKnown RBP10.35□□□□□ -0.75
VPS4YPR173C TSR3Q12094 313 aaKnown RBP10.11□□□□□ -0.79
VPS4YPR173C RPL17AP05740 184 aaKnown RBP10.03□□□□□ -0.8
VPS4YPR173C RPL17BP46990 184 aaKnown RBP10.03□□□□□ -0.8
VPS4YPR173C REB1P21538 810 aa9.89□□□□□ -0.83
VPS4YPR173C SGS1P35187 1447 aa9.72□□□□□ -0.85
VPS4YPR173C MRPL32P25348 183 aa9.68□□□□□ -0.86
VPS4YPR173C SPT21P35209 758 aa9.66□□□□□ -0.86
VPS4YPR173C SPA2P23201 1466 aaKnown RBP9.58□□□□□ -0.88
VPS4YPR173C RIM101P33400 625 aa9.54□□□□□ -0.88
VPS4YPR173C YGL015CP33199 130 aa9.46□□□□□ -0.9
VPS4YPR173C SSN2P38931 1420 aa9.45□□□□□ -0.9
VPS4YPR173C INO80P53115 1489 aa9.41□□□□□ -0.9
VPS4YPR173C YKR023WP36119 530 aaKnown RBP9.33□□□□□ -0.92
VPS4YPR173C PTP3P40048 928 aa9.28□□□□□ -0.92
VPS4YPR173C OXP1P28273 1286 aa9.23□□□□□ -0.93
VPS4YPR173C CDC27P38042 758 aa9.22□□□□□ -0.93
VPS4YPR173C BUD31P25337 157 aaPredicted RBP9.2□□□□□ -0.94
VPS4YPR173C TFC8Q12308 588 aa9.15□□□□□ -0.94
VPS4YPR173C HOP09932 586 aa9.14□□□□□ -0.95
VPS4YPR173C YAH1Q12184 172 aaKnown RBP9.14□□□□□ -0.95
VPS4YPR173C SSP1P38871 571 aa9.13□□□□□ -0.95
VPS4YPR173C YIL055CP40523 627 aaKnown RBP9.13□□□□□ -0.95
VPS4YPR173C TCB3Q03640 1545 aaKnown RBP9.12□□□□□ -0.95
VPS4YPR173C RQC2Q12532 1038 aaKnown RBP9.09□□□□□ -0.95
VPS4YPR173C DCD1P06773 312 aa9.07□□□□□ -0.96
VPS4YPR173C ARP8Q12386 881 aaKnown RBP RIP-Chip data9□□□□□ -0.97not detected
VPS4YPR173C YLR271WQ06152 274 aa8.99□□□□□ -0.97
VPS4YPR173C RSM7P47150 247 aa8.96□□□□□ -0.98
VPS4YPR173C SKI3P17883 1432 aaKnown RBP8.95□□□□□ -0.98
VPS4YPR173C MAP2P38174 421 aaKnown RBP8.94□□□□□ -0.98
VPS4YPR173C TY1B-DR4Q07793 1604 aa8.92□□□□□ -0.98
VPS4YPR173C UBP10P53874 792 aaPredicted RBP8.91□□□□□ -0.98
VPS4YPR173C BCH2P36122 765 aa8.88□□□□□ -0.99
VPS4YPR173C HSL1P34244 1518 aa8.84□□□□□ -0.99
VPS4YPR173C SPT6P23615 1451 aaKnown RBP8.82□□□□□ -1
VPS4YPR173C DMA1P38823 416 aa8.81□□□□□ -1
VPS4YPR173C AI2P03876 854 aa8.8□□□□□ -1
VPS4YPR173C MGA2P40578 1113 aa8.8□□□□□ -1
VPS4YPR173C BBC1P47068 1157 aa8.77□□□□□ -1.01
VPS4YPR173C PSD2P53037 1138 aaKnown RBP8.75□□□□□ -1.01
VPS4YPR173C EPS1P40557 701 aa8.74□□□□□ -1.01
VPS4YPR173C XRN1P22147 1528 aaKnown RBP8.73□□□□□ -1.01
VPS4YPR173C SCY1P53009 804 aa8.73□□□□□ -1.01
VPS4YPR173C CHD1P32657 1468 aa8.73□□□□□ -1.01
VPS4YPR173C HIR3P47171 1648 aa8.72□□□□□ -1.01
VPS4YPR173C CST9Q06032 482 aa8.72□□□□□ -1.01
VPS4YPR173C BDF1P35817 686 aa8.67□□□□□ -1.02
VPS4YPR173C MMS22Q06164 1454 aa8.67□□□□□ -1.02
VPS4YPR173C REV3P14284 1504 aa8.63□□□□□ -1.03
VPS4YPR173C THO2P53552 1597 aaKnown RBP8.63□□□□□ -1.03
VPS4YPR173C SIN3P22579 1536 aa8.62□□□□□ -1.03
VPS4YPR173C SIS1P25294 352 aaKnown RBP8.61□□□□□ -1.03
VPS4YPR173C SLX5P32828 619 aaKnown RBP8.59□□□□□ -1.03
VPS4YPR173C SSK2P53599 1579 aa8.56□□□□□ -1.04
VPS4YPR173C MRM1P25270 412 aa8.54□□□□□ -1.04
VPS4YPR173C TIF4632P39936 914 aaKnown RBP8.54□□□□□ -1.04
VPS4YPR173C SWR1Q05471 1514 aa8.54□□□□□ -1.04
VPS4YPR173C TGL3P40308 642 aa8.53□□□□□ -1.04
VPS4YPR173C MON2P48563 1636 aaPredicted RBP8.52□□□□□ -1.05
VPS4YPR173C TAF2P23255 1407 aa8.51□□□□□ -1.05
VPS4YPR173C YTA7P40340 1379 aa8.49□□□□□ -1.05
VPS4YPR173C MYO2P19524 1574 aaKnown RBP8.49□□□□□ -1.05
VPS4YPR173C ESP1Q03018 1630 aa8.47□□□□□ -1.05
VPS4YPR173C UBP9P39967 754 aa8.47□□□□□ -1.05
VPS4YPR173C STU1P38198 1513 aa8.46□□□□□ -1.05
VPS4YPR173C POL1P13382 1468 aa8.45□□□□□ -1.06
VPS4YPR173C RTG3P38165 486 aa8.44□□□□□ -1.06
VPS4YPR173C UFD4P33202 1483 aa8.43□□□□□ -1.06
VPS4YPR173C RCR1P38212 213 aa8.41□□□□□ -1.06
VPS4YPR173C SAS10Q12136 610 aaPredicted RBP8.41□□□□□ -1.06
VPS4YPR173C RAM2P29703 316 aa8.4□□□□□ -1.06
VPS4YPR173C NOP2P40991 618 aaKnown RBP8.39□□□□□ -1.07
VPS4YPR173C IKI3Q06706 1349 aaKnown RBP8.39□□□□□ -1.07
VPS4YPR173C TRM732Q03496 1420 aa8.38□□□□□ -1.07
VPS4YPR173C NSR1P27476 414 aaKnown RBP RIP-Chip data8.37□□□□□ -1.07not detected
VPS4YPR173C BUD4P47136 1447 aa8.35□□□□□ -1.07
VPS4YPR173C ECM5Q03214 1411 aa8.34□□□□□ -1.07
VPS4YPR173C TAF7Q05021 590 aa8.34□□□□□ -1.07
VPS4YPR173C YPK9Q12697 1472 aa8.34□□□□□ -1.07
VPS4YPR173C VPS29P38759 282 aa8.33□□□□□ -1.08
VPS4YPR173C BPT1P14772 1559 aa8.33□□□□□ -1.08
VPS4YPR173C DNA2P38859 1522 aa8.31□□□□□ -1.08
VPS4YPR173C MYO4P32492 1471 aa8.31□□□□□ -1.08
VPS4YPR173C SPP41P38904 1435 aa8.3□□□□□ -1.08
VPS4YPR173C YOR1P53049 1477 aa8.29□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms