RNA–Protein interactions for RNA: YPR088C

SRP54, Transcript of Signal recognition particle (SRP) subunit (homolog of mammalian SRP54), yeastyeast

Gene SRP54, Length 1,626 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SRP54YPR088C SGS1P35187 1447 aa15.35■□□□□ 0.05
SRP54YPR088C INO80P53115 1489 aa15.14■□□□□ 0.01
SRP54YPR088C MON2P48563 1636 aaPredicted RBP15.04■□□□□ -0
SRP54YPR088C TCB3Q03640 1545 aaKnown RBP15.04■□□□□ -0
SRP54YPR088C TY1B-DR4Q07793 1604 aa14.87□□□□□ -0.03
SRP54YPR088C SWR1Q05471 1514 aa14.64□□□□□ -0.07
SRP54YPR088C HSL1P34244 1518 aa14.52□□□□□ -0.08
SRP54YPR088C SSN2P38931 1420 aa14.52□□□□□ -0.09
SRP54YPR088C SPA2P23201 1466 aaKnown RBP14.51□□□□□ -0.09
SRP54YPR088C SPT6P23615 1451 aaKnown RBP14.49□□□□□ -0.09
SRP54YPR088C DNA2P38859 1522 aa14.31□□□□□ -0.12
SRP54YPR088C HIR3P47171 1648 aa14.25□□□□□ -0.13
SRP54YPR088C KOG1P38873 1557 aa14.24□□□□□ -0.13
SRP54YPR088C XRN1P22147 1528 aaKnown RBP14.12□□□□□ -0.15
SRP54YPR088C DRS1P32892 752 aaKnown RBP14.08□□□□□ -0.16
SRP54YPR088C REV3P14284 1504 aa13.9□□□□□ -0.18
SRP54YPR088C THO2P53552 1597 aaKnown RBP13.88□□□□□ -0.19
SRP54YPR088C BUD4P47136 1447 aa13.86□□□□□ -0.19
SRP54YPR088C ECM5Q03214 1411 aa13.84□□□□□ -0.19
SRP54YPR088C SIN3P22579 1536 aa13.82□□□□□ -0.2
SRP54YPR088C SSK2P53599 1579 aa13.71□□□□□ -0.22
SRP54YPR088C TAF2P23255 1407 aa13.7□□□□□ -0.22
SRP54YPR088C ATG2P53855 1592 aa13.66□□□□□ -0.22
SRP54YPR088C MDS3P53094 1487 aa13.63□□□□□ -0.23
SRP54YPR088C ESP1Q03018 1630 aa13.6□□□□□ -0.23
SRP54YPR088C PEP1P32319 1579 aa13.6□□□□□ -0.23
SRP54YPR088C SKI3P17883 1432 aaKnown RBP13.55□□□□□ -0.24
SRP54YPR088C MYO2P19524 1574 aaKnown RBP13.52□□□□□ -0.24
SRP54YPR088C YPK9Q12697 1472 aa13.42□□□□□ -0.26
SRP54YPR088C RSE1Q04693 1361 aaKnown RBP13.35□□□□□ -0.27
SRP54YPR088C SCC2Q04002 1493 aa13.32□□□□□ -0.28
SRP54YPR088C POL1P13382 1468 aa13.27□□□□□ -0.28
SRP54YPR088C RPO31P04051 1460 aa13.27□□□□□ -0.29
SRP54YPR088C UFD4P33202 1483 aa13.26□□□□□ -0.29
SRP54YPR088C BPT1P14772 1559 aa13.22□□□□□ -0.29
SRP54YPR088C STU1P38198 1513 aa13.18□□□□□ -0.3
SRP54YPR088C RKR1Q04781 1562 aa13.16□□□□□ -0.3
SRP54YPR088C YCF1P39109 1515 aaKnown RBP13.15□□□□□ -0.3
SRP54YPR088C TOP2P06786 1428 aaKnown RBP13.14□□□□□ -0.31
SRP54YPR088C TY2B-LR1P0C2J3 1770 aa13.1□□□□□ -0.31
SRP54YPR088C TY2B-FP0CX63 1770 aa13.1□□□□□ -0.31
SRP54YPR088C TY2B-GR2P0CX64 1770 aa13.1□□□□□ -0.31
SRP54YPR088C TY2B-CP25384 1770 aa13.1□□□□□ -0.31
SRP54YPR088C TY2B-DR2Q03494 1770 aa13.1□□□□□ -0.31
SRP54YPR088C TY1B-DR1Q03855 1755 aa13.1□□□□□ -0.31
SRP54YPR088C TY2B-DR3Q07791 1770 aaKnown RBP13.1□□□□□ -0.31
SRP54YPR088C TY2B-OR1Q12113 1770 aa13.1□□□□□ -0.31
SRP54YPR088C TY2B-DR1Q12472 1770 aa13.1□□□□□ -0.31
SRP54YPR088C TY2B-OR2Q12501 1770 aa13.1□□□□□ -0.31
SRP54YPR088C YOR1P53049 1477 aa13.1□□□□□ -0.31
SRP54YPR088C YTA7P40340 1379 aa13.06□□□□□ -0.32
SRP54YPR088C SMC4Q12267 1418 aa13.04□□□□□ -0.32
SRP54YPR088C MTC1P47018 478 aaKnown RBP13.02□□□□□ -0.33
SRP54YPR088C TY1B-DR3Q99231 1755 aa13.01□□□□□ -0.33
SRP54YPR088C CHD1P32657 1468 aa12.97□□□□□ -0.33
SRP54YPR088C TY2B-BQ12491 1770 aa12.97□□□□□ -0.33
SRP54YPR088C TY1B-BRQ12193 1756 aa12.95□□□□□ -0.34
SRP54YPR088C TY1B-GR3Q12316 1755 aa12.95□□□□□ -0.34
SRP54YPR088C TY1B-ORQ92393 1755 aa12.95□□□□□ -0.34
SRP54YPR088C MYO4P32492 1471 aa12.94□□□□□ -0.34
SRP54YPR088C CDC25P04821 1589 aa12.94□□□□□ -0.34
SRP54YPR088C TY1B-HO13535 1793 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-DR5P0C2I2 1755 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-DR6P0C2I3 1755 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-LR2P0C2I5 1755 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-LR3P0C2I6 1755 aaKnown RBP12.91□□□□□ -0.34
SRP54YPR088C TY1B-PR1P0C2I9 1755 aaKnown RBP12.91□□□□□ -0.34
SRP54YPR088C TY1B-PR2P0C2J0 1756 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-PR3P0C2J1 1755 aaKnown RBP12.91□□□□□ -0.34
SRP54YPR088C TY1B-JR1P47098 1755 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-ML2Q03434 1755 aaKnown RBP12.91□□□□□ -0.34
SRP54YPR088C TY1B-ER1Q03612 1755 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-ML1Q04711 1755 aaKnown RBP12.91□□□□□ -0.34
SRP54YPR088C TY1B-GR2Q12269 1755 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-OLQ12273 1755 aa12.91□□□□□ -0.34
SRP54YPR088C TY1B-PLQ12414 1755 aaKnown RBP12.91□□□□□ -0.34
SRP54YPR088C RQC2Q12532 1038 aaKnown RBP12.91□□□□□ -0.34
SRP54YPR088C MMS22Q06164 1454 aa12.89□□□□□ -0.35
SRP54YPR088C PAN1P32521 1480 aa12.87□□□□□ -0.35
SRP54YPR088C SPP41P38904 1435 aa12.85□□□□□ -0.35
SRP54YPR088C ESC1Q03661 1658 aaKnown RBP12.79□□□□□ -0.36
SRP54YPR088C SAS10Q12136 610 aaPredicted RBP12.77□□□□□ -0.37
SRP54YPR088C TSC11P40061 1430 aa12.76□□□□□ -0.37
SRP54YPR088C DNF1P32660 1571 aa12.75□□□□□ -0.37
SRP54YPR088C SNQ2P32568 1501 aaKnown RBP12.74□□□□□ -0.37
SRP54YPR088C VTH1P40438 1549 aa12.74□□□□□ -0.37
SRP54YPR088C VTH2P40890 1549 aa12.74□□□□□ -0.37
SRP54YPR088C RPA190P10964 1664 aaKnown RBP12.72□□□□□ -0.37
SRP54YPR088C TRM732Q03496 1420 aa12.71□□□□□ -0.37
SRP54YPR088C STH1P32597 1359 aa12.7□□□□□ -0.38
SRP54YPR088C TAF7Q05021 590 aa12.7□□□□□ -0.38
SRP54YPR088C TY1B-JR2P47100 1755 aaKnown RBP12.69□□□□□ -0.38
SRP54YPR088C TY1B-ER2Q03619 1755 aa12.69□□□□□ -0.38
SRP54YPR088C TY1B-MR1Q04214 1755 aa12.69□□□□□ -0.38
SRP54YPR088C TY1B-MR2Q04670 1755 aaKnown RBP12.69□□□□□ -0.38
SRP54YPR088C TY1B-LR1Q12088 1755 aaKnown RBP12.69□□□□□ -0.38
SRP54YPR088C TY1B-NL1Q12112 1755 aa12.69□□□□□ -0.38
SRP54YPR088C TY1B-GR1Q12141 1755 aa12.69□□□□□ -0.38
SRP54YPR088C TY1B-BLQ12490 1755 aa12.69□□□□□ -0.38
SRP54YPR088C MLP2P40457 1679 aa12.64□□□□□ -0.39
Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms