RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	MTC1	P47018	478 aa	Known RBP	17.94	■□□□□ 0.46
TFB4	YPR056W	DRS1	P32892	752 aa	Known RBP	17.05	■□□□□ 0.32
TFB4	YPR056W	FAP1	P53971	965 aa		15.64	■□□□□ 0.09
TFB4	YPR056W	PRI1	P10363	409 aa		14.91	□□□□□ -0.02
TFB4	YPR056W	DIP2	Q12220	943 aa	Predicted RBP	14.84	□□□□□ -0.03
TFB4	YPR056W	ISW2	Q08773	1120 aa		14.8	□□□□□ -0.04
TFB4	YPR056W	AAD16	Q02895	342 aa		14.78	□□□□□ -0.04
TFB4	YPR056W	PRY3	P47033	881 aa		14.67	□□□□□ -0.06
TFB4	YPR056W	RPG1	P38249	964 aa	Known RBP	14.58	□□□□□ -0.08
TFB4	YPR056W	AVT3	P36062	692 aa		14.43	□□□□□ -0.1
TFB4	YPR056W	BFR2	Q06631	534 aa	Known RBP	14.35	□□□□□ -0.11
TFB4	YPR056W	RSE1	Q04693	1361 aa	Known RBP	14.27	□□□□□ -0.12
TFB4	YPR056W	TSR3	Q12094	313 aa	Known RBP	14.04	□□□□□ -0.16
TFB4	YPR056W	HAA1	Q12753	694 aa	Known RBP	13.91	□□□□□ -0.18
TFB4	YPR056W	YCK3	P39962	524 aa		13.87	□□□□□ -0.19
TFB4	YPR056W	RPL17A	P05740	184 aa	Known RBP	13.76	□□□□□ -0.21
TFB4	YPR056W	RPL17B	P46990	184 aa	Known RBP	13.76	□□□□□ -0.21
TFB4	YPR056W	REB1	P21538	810 aa		13.67	□□□□□ -0.22
TFB4	YPR056W	MRPL32	P25348	183 aa		13.57	□□□□□ -0.24
TFB4	YPR056W	SPT21	P35209	758 aa		13.23	□□□□□ -0.29
TFB4	YPR056W	YKR023W	P36119	530 aa	Known RBP	12.97	□□□□□ -0.33
TFB4	YPR056W	TFA1	P36100	482 aa		12.96	□□□□□ -0.33
TFB4	YPR056W	YGL015C	P33199	130 aa		12.95	□□□□□ -0.34
TFB4	YPR056W	CDC27	P38042	758 aa		12.9	□□□□□ -0.34
TFB4	YPR056W	RIM101	P33400	625 aa		12.88	□□□□□ -0.35
TFB4	YPR056W	TFC8	Q12308	588 aa		12.73	□□□□□ -0.37
TFB4	YPR056W	HO	P09932	586 aa		12.65	□□□□□ -0.38
TFB4	YPR056W	UBP10	P53874	792 aa	Predicted RBP	12.6	□□□□□ -0.39
TFB4	YPR056W	DCD1	P06773	312 aa		12.54	□□□□□ -0.4
TFB4	YPR056W	MAP2	P38174	421 aa	Known RBP	12.46	□□□□□ -0.41
TFB4	YPR056W	OXP1	P28273	1286 aa		12.4	□□□□□ -0.42
TFB4	YPR056W	BCH2	P36122	765 aa		12.31	□□□□□ -0.44
TFB4	YPR056W	SCY1	P53009	804 aa		12.27	□□□□□ -0.45
TFB4	YPR056W	YIL055C	P40523	627 aa	Known RBP	12.24	□□□□□ -0.45
TFB4	YPR056W	PTP3	P40048	928 aa		12.18	□□□□□ -0.46
TFB4	YPR056W	SLX5	P32828	619 aa	Known RBP	12.15	□□□□□ -0.46
TFB4	YPR056W	TIF4632	P39936	914 aa	Known RBP	12.07	□□□□□ -0.48
TFB4	YPR056W	RSM7	P47150	247 aa		12.07	□□□□□ -0.48
TFB4	YPR056W	EPS1	P40557	701 aa		12.03	□□□□□ -0.48
TFB4	YPR056W	TGL3	P40308	642 aa		12.02	□□□□□ -0.49
TFB4	YPR056W	YAH1	Q12184	172 aa	Known RBP	12.02	□□□□□ -0.49
TFB4	YPR056W	BDF1	P35817	686 aa		11.98	□□□□□ -0.49
TFB4	YPR056W	BBC1	P47068	1157 aa		11.94	□□□□□ -0.5
TFB4	YPR056W	AI2	P03876	854 aa		11.91	□□□□□ -0.5
TFB4	YPR056W	YLR271W	Q06152	274 aa		11.91	□□□□□ -0.5
TFB4	YPR056W	SSP1	P38871	571 aa		11.89	□□□□□ -0.51
TFB4	YPR056W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.81	□□□□□ -0.52	not detected
TFB4	YPR056W	PSD2	P53037	1138 aa	Known RBP	11.72	□□□□□ -0.53
TFB4	YPR056W	BUD31	P25337	157 aa	Predicted RBP	11.69	□□□□□ -0.54
TFB4	YPR056W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.66	□□□□□ -0.54	not detected
TFB4	YPR056W	MST1	P07236	462 aa		11.58	□□□□□ -0.56
TFB4	YPR056W	MGA2	P40578	1113 aa		11.58	□□□□□ -0.56
TFB4	YPR056W	UBP9	P39967	754 aa		11.55	□□□□□ -0.56
TFB4	YPR056W	YOR238W	Q08634	303 aa		11.54	□□□□□ -0.56
TFB4	YPR056W	YAP5	P40574	245 aa		11.51	□□□□□ -0.57
TFB4	YPR056W	MRM1	P25270	412 aa		11.47	□□□□□ -0.57
TFB4	YPR056W	CST9	Q06032	482 aa		11.47	□□□□□ -0.57
TFB4	YPR056W	RTG3	P38165	486 aa		11.33	□□□□□ -0.6
TFB4	YPR056W	VPS29	P38759	282 aa		11.26	□□□□□ -0.61
TFB4	YPR056W	RQC2	Q12532	1038 aa	Known RBP	11.25	□□□□□ -0.61
TFB4	YPR056W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.24	□□□□□ -0.61	not detected
TFB4	YPR056W	GTT3	P39996	337 aa		11.21	□□□□□ -0.61
TFB4	YPR056W	YBL029C-A	Q3E756	94 aa		11.21	□□□□□ -0.61
TFB4	YPR056W	VNX1	P42839	908 aa		11.19	□□□□□ -0.62
TFB4	YPR056W	DBP1	P24784	617 aa	Known RBP	11.15	□□□□□ -0.62
TFB4	YPR056W	RCR1	P38212	213 aa		11.14	□□□□□ -0.63
TFB4	YPR056W	SIS1	P25294	352 aa	Known RBP	11.13	□□□□□ -0.63
TFB4	YPR056W	PIB1	Q06651	286 aa		11.13	□□□□□ -0.63
TFB4	YPR056W	STS1	P38637	319 aa		11.1	□□□□□ -0.63
TFB4	YPR056W	WSC3	Q12215	556 aa		11.09	□□□□□ -0.63
TFB4	YPR056W	SPP1	Q03012	353 aa		11.06	□□□□□ -0.64
TFB4	YPR056W	YFR006W	P43590	535 aa		11.05	□□□□□ -0.64
TFB4	YPR056W	MSB4	Q12317	492 aa		11.04	□□□□□ -0.64
TFB4	YPR056W	TIF11	P38912	153 aa	Known RBP	11.03	□□□□□ -0.64
TFB4	YPR056W	VMA1	P17255	1071 aa	Known RBP	11.02	□□□□□ -0.65
TFB4	YPR056W	SAM3	Q08986	587 aa		11	□□□□□ -0.65
TFB4	YPR056W	RAM2	P29703	316 aa		10.97	□□□□□ -0.65
TFB4	YPR056W	MAK11	P20484	414 aa	Known RBP	10.95	□□□□□ -0.66
TFB4	YPR056W	EAP1	P36041	632 aa	Known RBP	10.95	□□□□□ -0.66
TFB4	YPR056W	YOL036W	Q08206	761 aa		10.95	□□□□□ -0.66
TFB4	YPR056W	ULI1	P43604	169 aa		10.91	□□□□□ -0.66
TFB4	YPR056W	TAF7	Q05021	590 aa		10.9	□□□□□ -0.66
TFB4	YPR056W	SET4	P42948	560 aa		10.89	□□□□□ -0.67
TFB4	YPR056W	IOC2	Q12072	812 aa		10.89	□□□□□ -0.67
TFB4	YPR056W	ABP1	P15891	592 aa	Known RBP	10.87	□□□□□ -0.67
TFB4	YPR056W	FKH1	P40466	484 aa		10.82	□□□□□ -0.68
TFB4	YPR056W	GYP5	Q12344	894 aa		10.82	□□□□□ -0.68
TFB4	YPR056W	LDB19	Q12502	818 aa		10.82	□□□□□ -0.68
TFB4	YPR056W	TRP5	P00931	707 aa	Known RBP	10.8	□□□□□ -0.68
TFB4	YPR056W	AIR2	Q12476	344 aa	Known RBP	10.78	□□□□□ -0.68
TFB4	YPR056W	MIF2	P35201	549 aa		10.77	□□□□□ -0.69
TFB4	YPR056W	NOP53	Q12080	455 aa	Known RBP	10.76	□□□□□ -0.69
TFB4	YPR056W	COQ8	P27697	501 aa		10.75	□□□□□ -0.69
TFB4	YPR056W	EDS1	P38073	919 aa		10.74	□□□□□ -0.69
TFB4	YPR056W	HTA1	P04911	132 aa	Known RBP	10.72	□□□□□ -0.69
TFB4	YPR056W	HTA2	P04912	132 aa		10.72	□□□□□ -0.69
TFB4	YPR056W	PTC3	P34221	468 aa	Known RBP	10.72	□□□□□ -0.69
TFB4	YPR056W	YNL035C	P53962	389 aa	Known RBP	10.72	□□□□□ -0.69
TFB4	YPR056W	GRE2	Q12068	342 aa	Known RBP	10.72	□□□□□ -0.69
TFB4	YPR056W	JIP4	Q03361	876 aa		10.7	□□□□□ -0.7

Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms